RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 OR13J1Q8NGT2 312 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 TFAP2CQ92754 450 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 RTP3Q9BQQ7 232 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 RGS18Q9NS28 235 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 DNAAF2Q9NVR5 837 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 SARDHQ9UL12 918 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 PADI4Q9UM07 663 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 TIMM22Q9Y584 194 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 ANGPT2O15123 496 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 CDK14O94921 469 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 HAPLN1P10915 354 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 HOXD8P13378 290 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 NCK1P16333 377 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 PSMD5Q16401 504 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 PPP4R4Q6NUP7 873 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 KLHL35Q6PF15 583 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 ERMP1Q7Z2K6 904 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 TLK2Q86UE8 772 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 ERI1Q8IV48 349 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 CLYBLQ8N0X4 340 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 MIPOL1Q8TD10 442 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 FBXL20Q96IG2 436 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 TIMMDC1Q9NPL8 285 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 FAM105AQ9NUU6 356 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 OAZ3Q9UMX2 235 aa9.27□□□□□ -0.93
LIMCH1-215ENST00000512632 A0A1B0GTL3 188 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 H3BMM5 538 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 OR4Q2P0C623 313 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 HGFP14210 728 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 DNAJB1P25685 340 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 OXTRP30559 389 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 LEPRP48357 1165 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 DIO3P55073 304 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 ESRRGP62508 458 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 C16orf72Q14CZ0 275 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 KIAA0408Q6ZU52 694 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 GPR141Q7Z602 305 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 CILP2Q8IUL8 1156 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 TMEM86AQ8N2M4 240 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 CALML6Q8TD86 181 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 VPS33AQ96AX1 596 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 TSPAN17Q96FV3 270 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 PRKD2Q9BZL6 878 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 MUC3BQ9H195 1237 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 ST3GAL5Q9UNP4 418 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 TDRKHQ9Y2W6 561 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 CCL15-CCL14A0A0B4J2E2 113 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 GFAPP14136 432 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 IL10P22301 178 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 CCL15Q16663 113 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 RABL3Q5HYI8 236 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 SLC22A9Q8IVM8 553 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 CMTR2Q8IYT2 770 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 BLOC1S5Q8TDH9 187 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 TOP1MTQ969P6 601 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 ANKRD60Q9BZ19 345 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 NMUR1Q9HB89 426 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 CMTM6Q9NX76 183 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 SLC8A2Q9UPR5 921 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 E9PAM4 449 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 F8W810 466 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 S1PR4O95977 384 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 PRSS56P0CW18 603 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 YAP1P46937 504 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 ZNF135P52742 658 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 CTBSQ01459 385 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 PCBP1Q15365 356 aaKnown RBP eCLIP9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 HABP4Q5JVS0 413 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 FAM45BPQ6NSW5 357 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 KDELC1Q6UW63 502 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 EPHX4Q8IUS5 362 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 FAM45AQ8TCE6 357 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 ESAMQ96AP7 390 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 ADI1Q9BV57 179 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 CCM2LQ9NUG4 571 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 RNF181Q9P0P0 153 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 UXTQ9UBK9 157 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 NDUFAF1Q9Y375 327 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 HS3ST4Q9Y661 456 aa9.26□□□□□ -0.93
LIMCH1-215ENST00000512632 DLGAP1O14490 977 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 FASP25445 335 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 GRIK1P39086 918 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 PLCL1Q15111 1095 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 CYP51A1Q16850 503 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 UGT3A2Q3SY77 523 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 CAMK1DQ8IU85 385 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 LZTR1Q8N653 840 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 DCBLD1Q8N8Z6 715 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 OR10T2Q8NGX3 314 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 PTCD2Q8WV60 388 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 TWIST2Q8WVJ9 160 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 SEPHS2Q99611 448 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 SLC25A51Q9H1U9 297 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 SLC38A7Q9NVC3 462 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 TBC1D13Q9NVG8 400 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 TRIP12Q14669 1992 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 SBF1O95248 1867 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 ARL5CA6NH57 179 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 H0YJX3 145 aa9.25□□□□□ -0.93
LIMCH1-215ENST00000512632 CLOCKO15516 846 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms