RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 PEX6Q13608 980 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 KRT31Q15323 416 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 TCEA2Q15560 299 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 FKBP15Q5T1M5 1219 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 DNAJC24Q6P3W2 148 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 ZNF574Q6ZN55 896 aaPredicted RBP13.04□□□□□ -0.32
HDAC6-227ENST00000485102 NRROSQ86YC3 692 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 SFTPA2Q8IWL1 248 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 CCL4L1Q8NHW4 92 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 HTR3CQ8WXA8 447 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 COQ10AQ96MF6 247 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 PSKH2Q96QS6 385 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 DPYSL5Q9BPU6 564 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 SLC12A9Q9BXP2 914 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 TEX101Q9BY14 249 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 GSDMCQ9BYG8 508 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 SLC25A18Q9H1K4 315 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 VPS16Q9H269 839 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 SPATS2LQ9NUQ6 558 aaKnown RBP13.04□□□□□ -0.32
HDAC6-227ENST00000485102 TAB2Q9NYJ8 693 aa13.04□□□□□ -0.32
HDAC6-227ENST00000485102 FLNCQ14315 2725 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-227ENST00000485102 B4DGG1 531 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 HTRA2O43464 458 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-227ENST00000485102 FUCA1P04066 466 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 PRKCGP05129 697 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 CEACAM5P06731 702 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 DESP17661 470 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 CD1CP29017 333 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 HCAR3P49019 387 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 RENBPP51606 427 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 ARSDP51689 593 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 LIMK2P53671 638 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 MAPK10P53779 464 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 MYL5Q02045 173 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 SRSF1Q07955 248 aaKnown RBP eCLIP13.03□□□□□ -0.321e-10■■■□□ 15.3
HDAC6-227ENST00000485102 IL10RBQ08334 325 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 PHF19Q5T6S3 580 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 TMCO4Q5TGY1 634 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 VASH2Q86V25 355 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 PSTKQ8IV42 348 aaKnown RBP13.03□□□□□ -0.32
HDAC6-227ENST00000485102 ARHGAP12Q8IWW6 846 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 MCOLN2Q8IZK6 566 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 PELI3Q8N2H9 469 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 NKD1Q969G9 470 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 SCARF2Q96GP6 870 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-227ENST00000485102 NSMCE3Q96MG7 304 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 MCEEQ96PE7 176 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 TAAR9Q96RI9 348 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 FRMD8Q9BZ67 464 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-227ENST00000485102 RDH14Q9HBH5 336 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 PHPT1Q9NRX4 125 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-227ENST00000485102 TUBD1Q9UJT1 453 aa13.03□□□□□ -0.32
HDAC6-227ENST00000485102 IGHV5-10-1A0A0J9YXX1 117 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 LRRC10BA6NIK2 292 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 PSMD11O00231 422 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 EEF2KO00418 725 aaKnown RBP13.02□□□□□ -0.33
HDAC6-227ENST00000485102 SOCS5O75159 536 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 FGF3P11487 239 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-227ENST00000485102 CCL4P13236 92 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 CR2P20023 1033 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 OR1D5P58170 312 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 OGDHQ02218 1023 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 ILF3Q12906 894 aaKnown RBP eCLIP13.02□□□□□ -0.33
HDAC6-227ENST00000485102 SYCP1Q15431 976 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 MAP9Q49MG5 647 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 ERMARDQ5T6L9 678 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 ACAD10Q6JQN1 1059 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 PPP1R2P3Q6NXS1 205 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 DCUN1D2Q6PH85 259 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 LZTR1Q8N653 840 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 OR4D9Q8NGE8 314 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 ZDHHC1Q8WTX9 485 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 CELF6Q96J87 481 aaKnown RBP13.02□□□□□ -0.33
HDAC6-227ENST00000485102 ZNF599Q96NL3 588 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 AGPAT1Q99943 283 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 DDA1Q9BW61 102 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 CINPQ9BW66 212 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-227ENST00000485102 CARS2Q9HA77 564 aaKnown RBP13.02□□□□□ -0.33
HDAC6-227ENST00000485102 WDR70Q9NW82 654 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 TAAR2Q9P1P5 351 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 PDP2Q9P2J9 529 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 B4GALT6Q9UBX8 382 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 SEPT3Q9UH03 358 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 AP4E1Q9UPM8 1137 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 SLC17A4Q9Y2C5 497 aa13.02□□□□□ -0.33
HDAC6-227ENST00000485102 RELNP78509 3460 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 SYCE3A1L190 88 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 RHPN2P1A8MT19 583 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 GOLGA6L19H0YKK7 550 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 CAPN5O15484 640 aaPredicted RBP13.01□□□□□ -0.33
HDAC6-227ENST00000485102 ECEL1O95672 775 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 IVLP07476 585 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 ERCC2P18074 760 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 NFKBIAP25963 317 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 ALDH4A1P30038 563 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 HSPA9P38646 679 aaKnown RBP13.01□□□□□ -0.33
HDAC6-227ENST00000485102 ZNF165P49910 485 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 ATP1A2P50993 1020 aa13.01□□□□□ -0.33
HDAC6-227ENST00000485102 SCNN1BP51168 640 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms