RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 TCF4P15884 667 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 ZNF30P17039 623 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 GM2AP17900 193 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 CA4P22748 312 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 CCKBRP32239 447 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 TMPRSS3P57727 454 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 DPTQ07507 201 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 ACOX1Q15067 660 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 PAFAH1B3Q15102 231 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 PDK2Q15119 407 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 CNGA3Q16281 694 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 CLPPQ16740 277 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 C3orf38Q5JPI3 329 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 ARMC12Q5T9G4 340 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 OGFOD3Q6PK18 319 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 CLEC14AQ86T13 490 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 MAP7D3Q8IWC1 876 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 CBARPQ8N350 705 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 PGBD5Q8N414 524 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 KYQ8NBH2 561 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 PLA2G15Q8NCC3 412 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 ZNF564Q8TBZ8 553 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 KCNE4Q8WWG9 221 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 CCDC74AQ96AQ1 378 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 TMEM159Q96B96 161 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 DTD2Q96FN9 168 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 ATXN7L3BQ96GX2 97 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 TMEM74Q96NL1 305 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 TEX101Q9BY14 249 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 STRADBQ9C0K7 418 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 FGF22Q9HCT0 170 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 ETNK2Q9NVF9 386 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 NENFQ9UMX5 172 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 SSUH2Q9Y2M2 353 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 TMEM202A6NGA9 273 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 ATXN7O15265 892 aaPredicted RBP12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 ZW10O43264 779 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 H2AFZP0C0S5 128 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 MX2P20592 715 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 IL4RP24394 825 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 MAN1A1P33908 653 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 GARSP41250 739 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 PDX1P52945 283 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 CCDC173Q0VFZ6 552 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 GALNT2Q10471 571 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 TRAF2Q12933 501 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 ARHGEF7Q14155 803 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 CCDC122Q5T0U0 273 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 CERCAMQ5T4B2 595 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 TXNRD3NBQ6F5E7 133 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 H2AFVQ71UI9 128 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 RD3Q7Z3Z2 195 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 NLRP8Q86W28 1048 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 VSIG1Q86XK7 387 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 TP53INP2Q8IXH6 220 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 PDCD6IPQ8WUM4 868 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 SNRNP27Q8WVK2 155 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 OR1E3Q8WZA6 343 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 MAML1Q92585 1016 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 FAF2Q96CS3 445 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 TSGA13Q96PP4 275 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 GFM1Q96RP9 751 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 GSDMCQ9BYG8 508 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 NOD2Q9HC29 1040 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 TRNAU1APQ9NX07 287 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 GULP1Q9UBP9 304 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 ACSL6Q9UKU0 697 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 PCDHGC4Q9Y5F7 938 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 COL6A6A6NMZ7 2263 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 ATMQ13315 3056 aa12.14□□□□□ -0.47
SQSTM1-207ENST00000481335 SSU72P8A0A1W2PR75 194 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 CAPN8A6NHC0 703 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 ZNF487B1APH4 448 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 ERVH48-1M5A8F1 160 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 MATN3O15232 486 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 FZD6O60353 706 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 PROSCO94903 275 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 CCNCP24863 283 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 ARSEP51690 589 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 RPL26P61254 145 aaKnown RBP12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 CDK3Q00526 305 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 RHDQ02161 417 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 ILF3Q12906 894 aaKnown RBP eCLIP12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 DPYSL3Q14195 570 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 HLTFQ14527 1009 aaKnown RBP eCLIP12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 NFKBIBQ15653 356 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 SLC18A3Q16572 532 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 IFI16Q16666 785 aaKnown RBP12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 C14orf28Q4W4Y0 310 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 NCBP2-AS2Q69YL0 99 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 CRTC1Q6UUV9 634 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 ZNF765Q7L2R6 523 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 TAF8Q7Z7C8 310 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 HEATR4Q86WZ0 1026 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 FAM46DQ8NEK8 389 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 GPBAR1Q8TDU6 330 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 CTNNBL1Q8WYA6 563 aaPredicted RBP12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 WBP1Q96G27 269 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 CRELD1Q96HD1 420 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 PRR11Q96HE9 360 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms