RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 HIF1AQ16665 826 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 CARD16Q5EG05 197 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 ARL6IP4Q66PJ3 421 aaKnown RBP4.79□□□□□ -1.64
USP4-209ENST00000475873 PWWP2BQ6NUJ5 590 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 RPTNQ6XPR3 784 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 MEX3BQ6ZN04 569 aaKnown RBP4.79□□□□□ -1.64
USP4-209ENST00000475873 NELFCDQ8IXH7 590 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 ZNF683Q8IZ20 524 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 SIX6OS1Q8N1H7 587 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 DCAF4L2Q8NA75 395 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 SLC38A9Q8NBW4 561 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 ZNF507Q8TCN5 953 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 TAS1R2Q8TE23 839 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 ADAMTS18Q8TE60 1221 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 SLC37A2Q8TED4 501 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 NCSTNQ92542 709 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 NINJ1Q92982 152 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 EEF2KMTQ96G04 330 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 C18orf12Q96KH6 178 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 BTN2A3PQ96KV6 586 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 CCDC114Q96M63 670 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 KLHL32Q96NJ5 620 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 SERPINB11Q96P15 392 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 RPRD1AQ96P16 312 aaPredicted RBP4.79□□□□□ -1.64
USP4-209ENST00000475873 NIF3L1Q9GZT8 377 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 MUC3BQ9H195 1237 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 CYP3A43Q9HB55 503 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 ANLNQ9NQW6 1124 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 PANK4Q9NVE7 773 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 ARHGEF38Q9NXL2 777 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 HECAQ9UBI9 543 aaPredicted RBP4.79□□□□□ -1.64
USP4-209ENST00000475873 ZNF212Q9UDV6 495 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 SH3BGRL2Q9UJC5 107 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 VANGL2Q9ULK5 521 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 SNX10Q9Y5X0 201 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 MGAM2Q2M2H8 2515 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.78□□□□□ -1.642e-7■■■□□ 17.8
USP4-209ENST00000475873 TRGV8A0A0C4DH27 118 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 A0A1W2PQJ5 194 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 O00370 1275 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 ATMINO43313 823 aaPredicted RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 KIF1CO43896 1103 aaKnown RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 BUB1BO60566 1050 aaPredicted RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 CALCAP01258 141 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 C9P02748 559 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 RPN1P04843 607 aaKnown RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 CEACAM5P06731 702 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 TYRP1P17643 537 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 TRIM23P36406 574 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 PIK3CAP42336 1068 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 TSFMP43897 325 aaKnown RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 NOP2P46087 812 aaKnown RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 SEPHS1P49903 392 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 DNA2P51530 1060 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 BST2Q10589 180 aaKnown RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 GPS2Q13227 327 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 MYBPC3Q14896 1274 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 AGERQ15109 404 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 KYNUQ16719 465 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 C5orf22Q49AR2 442 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 TMEM52BQ4KMG9 183 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 ATXN7L2Q5T6C5 722 aaPredicted RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 TTC39BQ5VTQ0 682 aaPredicted RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 LYPLAL1Q5VWZ2 237 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 XKRXQ6PP77 449 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 TTC7BQ86TV6 843 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 ZSWIM9Q86XI8 627 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 RASGRP3Q8IV61 690 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 C12orf56Q8IXR9 622 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 CIARTQ8N365 385 aaPredicted RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 SFRP1Q8N474 314 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 ARFGAP1Q8N6T3 406 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 PCDH20Q8N6Y1 951 aaKnown RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 TMEM102Q8N9M5 508 aaPredicted RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 NETO2Q8NC67 525 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 CXorf40AQ8TE69 158 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 SLC35F5Q8WV83 523 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 IRGQQ8WZA9 623 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 TFAP2BQ92481 460 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 SEMA4DQ92854 862 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 TAAR6Q96RI8 345 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 C2orf49Q9BVC5 232 aaPredicted RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 TBC1D10AQ9BXI6 508 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 C1QTNF7Q9BXJ2 289 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 GPR87Q9BY21 358 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 BACH2Q9BYV9 841 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 CHST8Q9H2A9 424 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 CARS2Q9HA77 564 aaKnown RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 NPDC1Q9NQX5 325 aaPredicted RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 CISHQ9NSE2 258 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 ZNF358Q9NW07 568 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 MAPK8IP1Q9UQF2 711 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 FARSAQ9Y285 508 aaKnown RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 BTRCQ9Y297 605 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 PCYT1BQ9Y5K3 369 aaPredicted RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 HS3ST4Q9Y661 456 aa4.78□□□□□ -1.64
USP4-209ENST00000475873 CHD3Q12873 2000 aaKnown RBP4.78□□□□□ -1.64
USP4-209ENST00000475873 NUP210LQ5VU65 1888 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TRIM49BA6NDI0 452 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TLCD2A6NGC4 264 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms