RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	DNPEP	Q9ULA0	475 aa		11.55	□□□□□ -0.56
CPNE1-222	ENST00000473373	TFR2	Q9UP52	801 aa		11.55	□□□□□ -0.56
CPNE1-222	ENST00000473373	GPSM3	Q9Y4H4	160 aa		11.55	□□□□□ -0.56
CPNE1-222	ENST00000473373	ALG6	Q9Y672	507 aa		11.55	□□□□□ -0.56
CPNE1-222	ENST00000473373	EPN1	Q9Y6I3	576 aa	Predicted RBP	11.55	□□□□□ -0.56
CPNE1-222	ENST00000473373	AK5	Q9Y6K8	562 aa		11.55	□□□□□ -0.56
CPNE1-222	ENST00000473373	ZNF487	B1APH4	448 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	HTRA2	O43464	458 aa	Predicted RBP	11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	CST8	O60676	142 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	HEXIM1	O94992	359 aa	Known RBP	11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	ZRANB2	O95218	330 aa	Known RBP eCLIP	11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	PEX11B	O96011	259 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	SLC4A1	P02730	911 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	MYF5	P13349	255 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	ACP1	P24666	158 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	CD86	P42081	329 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	GPR1	P46091	355 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	PPM1F	P49593	454 aa	Predicted RBP	11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	HK3	P52790	923 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	NR0B2	Q15466	257 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	PCSK7	Q16549	785 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	COL28A1	Q2UY09	1125 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	SOWAHC	Q53LP3	525 aa	Predicted RBP	11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	TFDP3	Q5H9I0	405 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	TPRG1L	Q5T0D9	272 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	MFSD7	Q6UXD7	560 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	CCNI2	Q6ZMN8	369 aa	Predicted RBP	11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	KANSL1	Q7Z3B3	1105 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	KDELC2	Q7Z4H8	507 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	TAF8	Q7Z7C8	310 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	PDZD3	Q86UT5	571 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	MARCH9	Q86YJ5	346 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	FSTL5	Q8N475	847 aa	Predicted RBP	11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	TEX26	Q8N6G2	289 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	PLD5	Q8N7P1	536 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	PLA2G15	Q8NCC3	412 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	OR56A4	Q8NGH8	313 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	IFI44	Q8TCB0	444 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	MAPK15	Q8TD08	544 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	CCHCR1	Q8TD31	782 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	MAML1	Q92585	1016 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	P3H4	Q92791	437 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	HAUS1	Q96CS2	278 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	AGAP3	Q96P47	875 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	BAG1	Q99933	345 aa	Predicted RBP	11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	LRRC61	Q9BV99	259 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	ADGRE3	Q9BY15	652 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	TCEAL2	Q9H3H9	227 aa	Predicted RBP	11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	CAAP1	Q9H8G2	361 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	PCDH9	Q9HC56	1237 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	CYP4F12	Q9HCS2	524 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	CD84	Q9UIB8	345 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	CLCA2	Q9UQC9	943 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373	CSNK1G3	Q9Y6M4	447 aa		11.54	□□□□□ -0.56
CPNE1-222	ENST00000473373		A0A0A6YYK5	440 aa	Predicted RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	C1orf232	A0A0U1RR37	186 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	NPIPB15	A6NHN6	443 aa	Predicted RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	PSMD11	O00231	422 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	PDHA1	P08559	390 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	TSHR	P16473	764 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	TGM2	P21980	687 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	ETV3	P41162	512 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	CLDN6	P56747	220 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	PPID	Q08752	370 aa	Known RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	SLC10A2	Q12908	348 aa	Predicted RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	ALG11	Q2TAA5	492 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	PROX2	Q3B8N5	592 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	LRRC66	Q68CR7	880 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	SLC9A4	Q6AI14	798 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	C11orf63	Q6NUN7	778 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	PNCK	Q6P2M8	343 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	DOK6	Q6PKX4	331 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	SPOCD1	Q6ZMY3	1216 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	B4GALNT4	Q76KP1	1039 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	TSPAN33	Q86UF1	283 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	NT5DC3	Q86UY8	548 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	ZC3H18	Q86VM9	953 aa	Known RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	VSIG1	Q86XK7	387 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	RCOR2	Q8IZ40	523 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	TFB1M	Q8WVM0	346 aa	Known RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	HNRNPLL	Q8WVV9	542 aa	Known RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	VOPP1	Q96AW1	172 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	SCRN2	Q96FV2	425 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	CALR3	Q96L12	384 aa	Known RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	TDRD1	Q9BXT4	1180 aa	Known RBP	11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	BRD8	Q9H0E9	1235 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	USP29	Q9HBJ7	922 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	GPR27	Q9NS67	375 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	KLF15	Q9UIH9	416 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	GPR34	Q9UPC5	381 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	UNC13C	Q8NB66	2214 aa		11.53	□□□□□ -0.56
CPNE1-222	ENST00000473373	ASXL3	Q9C0F0	2248 aa		11.52	□□□□□ -0.56
CPNE1-222	ENST00000473373		A0A0J9YYE9	177 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373		H7C0C1	242 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	TPP1	O14773	563 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	LCA5L	O95447	670 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	ASMTL	O95671	621 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	TRBC1	P01850	177 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	MYCLP1	P12525	358 aa	Predicted RBP	11.52	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms