RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 C14orf28Q4W4Y0 310 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 CCNJLQ8IV13 435 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 ZNF843Q8N446 348 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 PDCD6IPQ8WUM4 868 aaKnown RBP17.51■□□□□ 0.39
COL7A1-208ENST00000470076 NSMCE1Q8WV22 266 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 TEKT4Q8WW24 435 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 HSPH1Q92598 858 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 NUS1Q96E22 293 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 MGME1Q9BQP7 344 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 FOXP3Q9BZS1 431 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 DPEP2Q9H4A9 486 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 PHPT1Q9NRX4 125 aaPredicted RBP17.51■□□□□ 0.39
COL7A1-208ENST00000470076 ETNK2Q9NVF9 386 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.51■□□□□ 0.39
COL7A1-208ENST00000470076 MOSPD1Q9UJG1 213 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 PHTF1Q9UMS5 762 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 BZW2Q9Y6E2 419 aaKnown RBP17.51■□□□□ 0.39
COL7A1-208ENST00000470076 PIEZO2Q9H5I5 2752 aa17.51■□□□□ 0.39
COL7A1-208ENST00000470076 PRSS38A1L453 326 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 TTC24A2A3L6 582 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-208ENST00000470076 K7ENP7 123 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 NUDT21O43809 227 aaKnown RBP17.5■□□□□ 0.39
COL7A1-208ENST00000470076 HEXIM1O94992 359 aaKnown RBP17.5■□□□□ 0.39
COL7A1-208ENST00000470076 SERPINC1P01008 464 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 RARAP10276 462 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 CYP2A6P11509 494 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-208ENST00000470076 TCF4P15884 667 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 CLN3Q13286 438 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 HLTFQ14527 1009 aaKnown RBP eCLIP17.5■□□□□ 0.39
COL7A1-208ENST00000470076 TDRD12Q587J7 1177 aaKnown RBP17.5■□□□□ 0.39
COL7A1-208ENST00000470076 INO80CQ6PI98 192 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-208ENST00000470076 PELI3Q8N2H9 469 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 PGBD5Q8N414 524 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 ATPAF2Q8N5M1 289 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 NIPA2Q8N8Q9 360 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 KIAA1524Q8TCG1 905 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 TEX101Q9BY14 249 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 NOD2Q9HC29 1040 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 LRIT1Q9P2V4 623 aa17.5■□□□□ 0.39
COL7A1-208ENST00000470076 SCN8AQ9UQD0 1980 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 B4DGG1 531 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 PSMD11O00231 422 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 SLC5A2P31639 672 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 MMP13P45452 471 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 TRAF2Q12933 501 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 ARHGEF7Q14155 803 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 IQCB1Q15051 598 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 MARC1Q5VT66 337 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 HGSNATQ68CP4 663 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 SPECC1LQ69YQ0 1117 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 CCDC81Q6ZN84 652 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 SPRED1Q7Z699 444 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 ZNF605Q86T29 641 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 HEATR4Q86WZ0 1026 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 LRRC49Q8IUZ0 686 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 CBARPQ8N350 705 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-208ENST00000470076 Q8N9G6 341 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-208ENST00000470076 CCL4L1Q8NHW4 92 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 SYN2Q92777 582 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-208ENST00000470076 TMEM159Q96B96 161 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 DTD2Q96FN9 168 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 SCRN2Q96FV2 425 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.49■□□□□ 0.39
COL7A1-208ENST00000470076 CARS2Q9HA77 564 aaKnown RBP17.49■□□□□ 0.39
COL7A1-208ENST00000470076 PCDH18Q9HCL0 1135 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 IP6K2Q9UHH9 426 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 ACSL6Q9UKU0 697 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 RNF215Q9Y6U7 377 aa17.49■□□□□ 0.39
COL7A1-208ENST00000470076 A0A1W2PQJ5 194 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 PGLSO95336 258 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 JMJD7P0C870 316 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 CCNB1P14635 433 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 TEAD1P28347 426 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 ZFP36L1Q07352 338 aaKnown RBP17.48■□□□□ 0.39
COL7A1-208ENST00000470076 ILF3Q12906 894 aaKnown RBP eCLIP17.48■□□□□ 0.39
COL7A1-208ENST00000470076 ARMC12Q5T9G4 340 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 DENND2CQ68D51 928 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 CAVIN1Q6NZI2 390 aaKnown RBP17.48■□□□□ 0.39
COL7A1-208ENST00000470076 USP45Q70EL2 814 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 JAMLQ86YT9 394 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 GPBAR1Q8TDU6 330 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 TTC9Q92623 222 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 MCCC1Q96RQ3 725 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-208ENST00000470076 CCNL2Q96S94 520 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-208ENST00000470076 GSDMCQ9BYG8 508 aa17.48■□□□□ 0.39
COL7A1-208ENST00000470076 TRNAU1APQ9NX07 287 aaKnown RBP17.48■□□□□ 0.39
COL7A1-208ENST00000470076 RCOR3Q9P2K3 495 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-208ENST00000470076 ATXN7L1Q9ULK2 861 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-208ENST00000470076 NPIPB15A6NHN6 443 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-208ENST00000470076 NVLO15381 856 aaKnown RBP17.47■□□□□ 0.39
COL7A1-208ENST00000470076 CEACAM5P06731 702 aa17.47■□□□□ 0.39
COL7A1-208ENST00000470076 KRT10P13645 584 aa17.47■□□□□ 0.39
COL7A1-208ENST00000470076 LHCGRP22888 699 aa17.47■□□□□ 0.39
COL7A1-208ENST00000470076 ETV3P41162 512 aa17.47■□□□□ 0.39
COL7A1-208ENST00000470076 MAXP61244 160 aa17.47■□□□□ 0.39
COL7A1-208ENST00000470076 SLC25A11Q02978 314 aaKnown RBP17.47■□□□□ 0.39
COL7A1-208ENST00000470076 ZSCAN23Q3MJ62 389 aa17.47■□□□□ 0.39
COL7A1-208ENST00000470076 TXNRD3NBQ6F5E7 133 aa17.47■□□□□ 0.39
COL7A1-208ENST00000470076 HSD11B1LQ7Z5J1 315 aa17.47■□□□□ 0.39
COL7A1-208ENST00000470076 SFTPA2Q8IWL1 248 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms