RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 SPIDRQ14159 915 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 PAFAH1B3Q15102 231 aaKnown RBP12.9□□□□□ -0.34
CHD3-206ENST00000452447 IFI16Q16666 785 aaKnown RBP12.9□□□□□ -0.34
CHD3-206ENST00000452447 NCBP2-AS2Q69YL0 99 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 NYAP1Q6ZVC0 841 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 TAF8Q7Z7C8 310 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.9□□□□□ -0.34
CHD3-206ENST00000452447 TEX26Q8N6G2 289 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 OR1E3Q8WZA6 343 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 SCRN2Q96FV2 425 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 CCDC42Q96M95 316 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 COQ10AQ96MF6 247 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 ZNF578Q96N58 590 aaPredicted RBP12.9□□□□□ -0.34
CHD3-206ENST00000452447 RBM15Q96T37 977 aaKnown RBP eCLIP12.9□□□□□ -0.34
CHD3-206ENST00000452447 DNAJC7Q99615 494 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 LGR4Q9BXB1 951 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 CYP4F12Q9HCS2 524 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 FGF22Q9HCT0 170 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 MRPL40Q9NQ50 206 aaKnown RBP12.9□□□□□ -0.34
CHD3-206ENST00000452447 GOLGA6AQ9NYA3 693 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 RAI2Q9Y5P3 530 aa12.9□□□□□ -0.34
CHD3-206ENST00000452447 PSMD11O00231 422 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 MATN3O15232 486 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 MAP3K6O95382 1288 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 MYCLP1P12525 358 aaPredicted RBP12.9□□□□□ -0.35
CHD3-206ENST00000452447 GM2AP17900 193 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 MX2P20592 715 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 CES1P23141 567 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 CCNCP24863 283 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 ETV3P41162 512 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 EPHB1P54762 984 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 MESDQ14696 234 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 ASTE1Q2TB18 679 aaPredicted RBP12.9□□□□□ -0.35
CHD3-206ENST00000452447 C3orf38Q5JPI3 329 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 CPNE8Q86YQ8 564 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 PIAS4Q8N2W9 510 aaPredicted RBP12.9□□□□□ -0.35
CHD3-206ENST00000452447 KYQ8NBH2 561 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 FAM46DQ8NEK8 389 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 OR6C4Q8NGE1 309 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 ATXN7L3BQ96GX2 97 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 LGMNQ99538 433 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 TSPY26PQ9H489 355 aa12.9□□□□□ -0.35
CHD3-206ENST00000452447 PHPT1Q9NRX4 125 aaPredicted RBP12.9□□□□□ -0.35
CHD3-206ENST00000452447 RBM22Q9NW64 420 aaKnown RBP eCLIP12.9□□□□□ -0.35
CHD3-206ENST00000452447 NPIPB15A6NHN6 443 aaPredicted RBP12.89□□□□□ -0.35
CHD3-206ENST00000452447 TMEM253P0C7T8 217 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 CTPS1P17812 591 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 LHCGRP22888 699 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 RBMS1P29558 406 aaKnown RBP12.89□□□□□ -0.35
CHD3-206ENST00000452447 MAN1A1P33908 653 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 PCBP4P57723 403 aaKnown RBP12.89□□□□□ -0.35
CHD3-206ENST00000452447 TAS2R40P59535 323 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 ERVPABLB-1P60509 514 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 CCDC173Q0VFZ6 552 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 KCTD16Q68DU8 428 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 RAET1GQ6H3X3 334 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 Q6ZVL8 140 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 HSD11B1LQ7Z5J1 315 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 HEATR4Q86WZ0 1026 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 PELI3Q8N2H9 469 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 CCNYQ8ND76 341 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 ZNF248Q8NDW4 579 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 SLC35G2Q8TBE7 412 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 MAML1Q92585 1016 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 CCDC74AQ96AQ1 378 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 DTD2Q96FN9 168 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 ZNF830Q96NB3 372 aaPredicted RBP12.89□□□□□ -0.35
CHD3-206ENST00000452447 MCCC1Q96RQ3 725 aaPredicted RBP12.89□□□□□ -0.35
CHD3-206ENST00000452447 TMEM168Q9H0V1 697 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 DPEP2Q9H4A9 486 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 THSD1Q9NS62 852 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 ABHD10Q9NUJ1 306 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 AMACRQ9UHK6 382 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 SATB2Q9UPW6 733 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 PPIL1Q9Y3C6 166 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 ENTPD2Q9Y5L3 495 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 MGAQ8IWI9 3026 aa12.89□□□□□ -0.35
CHD3-206ENST00000452447 COL27A1Q8IZC6 1860 aaPredicted RBP12.88□□□□□ -0.35
CHD3-206ENST00000452447 PRSS38A1L453 326 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 DXOO77932 396 aaKnown RBP12.88□□□□□ -0.35
CHD3-206ENST00000452447 PDHA1P08559 390 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 CCNB1P14635 433 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 CA4P22748 312 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 KDELR1P24390 212 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 GBE1Q04446 702 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 TSPAN33Q86UF1 283 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 VSTM4Q8IW00 320 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 CBARPQ8N350 705 aaPredicted RBP12.88□□□□□ -0.35
CHD3-206ENST00000452447 RNF214Q8ND24 703 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 PIH1D2Q8WWB5 315 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 FATE1Q969F0 183 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 FAF2Q96CS3 445 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 CRELD1Q96HD1 420 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 TSGA13Q96PP4 275 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 GFM1Q96RP9 751 aaKnown RBP12.88□□□□□ -0.35
CHD3-206ENST00000452447 TEX101Q9BY14 249 aa12.88□□□□□ -0.35
CHD3-206ENST00000452447 SUDS3Q9H7L9 328 aaPredicted RBP12.88□□□□□ -0.35
CHD3-206ENST00000452447 NHEJ1Q9H9Q4 299 aaPredicted RBP12.88□□□□□ -0.35
CHD3-206ENST00000452447 CARS2Q9HA77 564 aaKnown RBP12.88□□□□□ -0.35
CHD3-206ENST00000452447 ZFC3H1O60293 1989 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms