RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CTNNBL1Q8WYA6 563 aaPredicted RBP20.77■□□□□ 0.92
SDC1-205ENST00000447124 ATXN7L3BQ96GX2 97 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 TSGA13Q96PP4 275 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 MCCC1Q96RQ3 725 aaPredicted RBP20.77■□□□□ 0.92
SDC1-205ENST00000447124 ZNF670Q9BS34 389 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 TMEM168Q9H0V1 697 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 KIF26BQ2KJY2 2108 aa20.77■□□□□ 0.91
SDC1-205ENST00000447124 IGSF10Q6WRI0 2623 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 NTN3O00634 580 aaPredicted RBP20.76■□□□□ 0.91
SDC1-205ENST00000447124 CBFA2T2O43439 604 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 TMEM253P0C7T8 217 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 CYP2A6P11509 494 aaPredicted RBP20.76■□□□□ 0.91
SDC1-205ENST00000447124 ACTN2P35609 894 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 GABREP78334 506 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 DSC2Q02487 901 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 OGFOD3Q6PK18 319 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 Q6ZVL8 140 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 TECPR1Q7Z6L1 1165 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 GPR156Q8NFN8 814 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 SLC35G2Q8TBE7 412 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 NAT6Q93015 286 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 NUS1Q96E22 293 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 DTD2Q96FN9 168 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 PRR11Q96HE9 360 aaPredicted RBP20.76■□□□□ 0.91
SDC1-205ENST00000447124 POLR1BQ9H9Y6 1135 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 RBM22Q9NW64 420 aaKnown RBP eCLIP20.76■□□□□ 0.91
SDC1-205ENST00000447124 LRP4O75096 1905 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 ATRXP46100 2492 aa20.76■□□□□ 0.91
SDC1-205ENST00000447124 PMS2P1A4D2B8 440 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 DXOO77932 396 aaKnown RBP20.75■□□□□ 0.91
SDC1-205ENST00000447124 KDELR1P24390 212 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 CCNCP24863 283 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 ABCG1P45844 678 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 PDX1P52945 283 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 ITKQ08881 620 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 NIPAL4Q0D2K0 466 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 TRIM14Q14142 442 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 MESDQ14696 234 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 IFI16Q16666 785 aaKnown RBP20.75■□□□□ 0.91
SDC1-205ENST00000447124 FAM182AQ5T1J6 154 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 RBM44Q6ZP01 1051 aaKnown RBP20.75■□□□□ 0.91
SDC1-205ENST00000447124 TAF8Q7Z7C8 310 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.75■□□□□ 0.91
SDC1-205ENST00000447124 ARRDC2Q8TBH0 407 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 PTCD2Q8WV60 388 aaKnown RBP20.75■□□□□ 0.91
SDC1-205ENST00000447124 CCDC74AQ96AQ1 378 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 BBC3Q96PG8 261 aaPredicted RBP20.75■□□□□ 0.91
SDC1-205ENST00000447124 TEX101Q9BY14 249 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 WDR26Q9H7D7 661 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 CYP4F12Q9HCS2 524 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 ASCL3Q9NQ33 180 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 SPTLC3Q9NUV7 552 aa20.75■□□□□ 0.91
SDC1-205ENST00000447124 ARHGEF17Q96PE2 2063 aaPredicted RBP20.74■□□□□ 0.91
SDC1-205ENST00000447124 UNC13CQ8NB66 2214 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 AKR1B10O60218 316 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 TCEA3O75764 348 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 PRLP01236 227 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 CEACAM5P06731 702 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 KRT7P08729 469 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 KELP23276 732 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 MAN1A1P33908 653 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 CCL7P80098 99 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 PTSQ03393 145 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 ALG1LQ6GMV1 187 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 LRRC69Q6ZNQ3 347 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 MAP7D3Q8IWC1 876 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 RNF214Q8ND24 703 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 FAM46DQ8NEK8 389 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 FATE1Q969F0 183 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 HIC2Q96JB3 615 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 ZNF578Q96N58 590 aaPredicted RBP20.74■□□□□ 0.91
SDC1-205ENST00000447124 RNF157Q96PX1 679 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 POLR1EQ9GZS1 481 aaKnown RBP20.74■□□□□ 0.91
SDC1-205ENST00000447124 TSPY26PQ9H489 355 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 DEF6Q9H4E7 631 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 NHEJ1Q9H9Q4 299 aaPredicted RBP20.74■□□□□ 0.91
SDC1-205ENST00000447124 ABHD10Q9NUJ1 306 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 MOSPD1Q9UJG1 213 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 SATB2Q9UPW6 733 aa20.74■□□□□ 0.91
SDC1-205ENST00000447124 A0A1W2PQM1 296 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 PSMD11O00231 422 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 RRP8O43159 456 aaKnown RBP20.73■□□□□ 0.91
SDC1-205ENST00000447124 NOBOXO60393 691 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 MYCLP1P12525 358 aaPredicted RBP20.73■□□□□ 0.91
SDC1-205ENST00000447124 CCDC173Q0VFZ6 552 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 C3orf38Q5JPI3 329 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 TIGD7Q6NT04 549 aaPredicted RBP20.73■□□□□ 0.91
SDC1-205ENST00000447124 HEATR4Q86WZ0 1026 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 NRROSQ86YC3 692 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 LSMEM2Q8N112 164 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 GRAMD1AQ96CP6 724 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 FRMD8Q9BZ67 464 aaPredicted RBP20.73■□□□□ 0.91
SDC1-205ENST00000447124 ABCG8Q9H221 673 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 PRORYQ9H606 182 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 ZNHIT6Q9NWK9 470 aaKnown RBP20.73■□□□□ 0.91
SDC1-205ENST00000447124 DTLQ9NZJ0 730 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 CHKBQ9Y259 395 aa20.73■□□□□ 0.91
SDC1-205ENST00000447124 LOC400499M0QZD8 3231 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 A0A0J9YYE9 177 aa20.72■□□□□ 0.91
SDC1-205ENST00000447124 PRSS38A1L453 326 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms