RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 POM121L1PQ3SYA9 428 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 C4orf22Q6V702 233 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 IQCHQ86VS3 1027 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 SLC25A45Q8N413 288 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 SNIP1Q8TAD8 396 aaKnown RBP12.24□□□□□ -0.45
PTPRF-208ENST00000437607 FATE1Q969F0 183 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 LRRC45Q96CN5 670 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 SNF8Q96H20 258 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 ZNF599Q96NL3 588 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 ERP44Q9BS26 406 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 CEP41Q9BYV8 373 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 PPM1HQ9ULR3 514 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 DMTF1Q9Y222 760 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 SCN8AQ9UQD0 1980 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 ANKRD36A6QL64 1941 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 C5orf60A6NFR6 353 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 EIF4E1BA6NMX2 242 aaKnown RBP12.23□□□□□ -0.45
PTPRF-208ENST00000437607 ATXN7O15265 892 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-208ENST00000437607 SIGLEC6O43699 453 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 BRINP1O60477 761 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 CTSLP07711 333 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 GIMD1P0DJR0 217 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 CCNB1P14635 433 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 ADCY8P40145 1251 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 NNMTP40261 264 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 MMP13P45452 471 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 RENBPP51606 427 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 ZBTB17Q13105 803 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 ILKQ13418 452 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 HLTFQ14527 1009 aaKnown RBP eCLIP12.23□□□□□ -0.45
PTPRF-208ENST00000437607 RFTN1Q14699 578 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-208ENST00000437607 DLG2Q15700 870 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 PIP5KL1Q5T9C9 394 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 IZUMO3Q5VZ72 239 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 RETSATQ6NUM9 610 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 Q6ZVU0 165 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 IFT20Q8IY31 132 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 CACTIN-AS1Q8N1I8 211 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 DCBLD1Q8N8Z6 715 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 BBOF1Q8ND07 529 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 CCDC110Q8TBZ0 833 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 OR8D1Q8WZ84 308 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 SLC39A7Q92504 469 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 MAML1Q92585 1016 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 FEM1AQ9BSK4 669 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 CINPQ9BW66 212 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-208ENST00000437607 GBA3Q9H227 469 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 ANKZF1Q9H8Y5 726 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 USP29Q9HBJ7 922 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 EPB41L5Q9HCM4 733 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 FAM114A2Q9NRY5 505 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 RSPH14Q9UHP6 348 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 VPS51Q9UID3 782 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 SLC25A13Q9UJS0 675 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 TRHDEQ9UKU6 1024 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 PIEZO2Q9H5I5 2752 aa12.23□□□□□ -0.45
PTPRF-208ENST00000437607 BSNQ9UPA5 3926 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 ESYT3A0FGR9 886 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 GOLGA6CA6NDK9 693 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 GOLGA6BA6NDN3 693 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 E7EVH7 732 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 PRAMEF26H0Y7S4 382 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 J3KR12 359 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 CTIFO43310 598 aaKnown RBP12.22□□□□□ -0.45
PTPRF-208ENST00000437607 KDELR3O43731 214 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 SNAP91O60641 907 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 RNGTTO60942 597 aaKnown RBP12.22□□□□□ -0.45
PTPRF-208ENST00000437607 GCATO75600 419 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 JCHAINP01591 159 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 TUBBP07437 444 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 ZSCAN5DPP0CG00 497 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 GOLGA6DP0CG33 693 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 ETS1P14921 441 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 GLDCP23378 1020 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 RPL22P35268 128 aaKnown RBP12.22□□□□□ -0.45
PTPRF-208ENST00000437607 NUDT1P36639 197 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 FDFT1P37268 417 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 WASHC5Q12768 1159 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 CUL1Q13616 776 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 LBRQ14739 615 aaKnown RBP12.22□□□□□ -0.45
PTPRF-208ENST00000437607 STAT4Q14765 748 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 ACCSLQ4AC99 568 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 ANKRD20A2Q5SQ80 823 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 ANKRD20A1Q5TYW2 823 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 MARC1Q5VT66 337 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 ANKRD20A3Q5VUR7 823 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 FAM46CQ5VWP2 391 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 PCSK4Q6UW60 755 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 LRRC69Q6ZNQ3 347 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 PRUNE1Q86TP1 453 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 ZNF567Q8N184 647 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 SH2D3CQ8N5H7 860 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 GLIS1Q8NBF1 620 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 TMEM145Q8NBT3 493 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 KLK6Q92876 244 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 ARRDC3Q96B67 414 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 FCRL3Q96P31 734 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-208ENST00000437607 PPP1R2P1Q96PQ5 205 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 FAM129AQ9BZQ8 928 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 PDFQ9HBH1 243 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms