RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 SNX20Q7Z614 316 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 ARID3BQ8IVW6 561 aaPredicted RBP8.4□□□□□ -1.07
USP54-203ENST00000418501 RAVER1Q8IY67 606 aaKnown RBP8.4□□□□□ -1.07
USP54-203ENST00000418501 CSGALNACT1Q8TDX6 532 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 OSCP1Q8WVF1 389 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 NECTIN4Q96NY8 510 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 TFB2MQ9H5Q4 396 aaKnown RBP8.4□□□□□ -1.07
USP54-203ENST00000418501 NSUN3Q9H649 340 aaKnown RBP8.4□□□□□ -1.07
USP54-203ENST00000418501 SIRPGQ9P1W8 387 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 DNMT3BQ9UBC3 853 aaKnown RBP8.4□□□□□ -1.07
USP54-203ENST00000418501 EVLQ9UI08 416 aaPredicted RBP8.4□□□□□ -1.07
USP54-203ENST00000418501 DCTN4Q9UJW0 460 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 RNF112Q9ULX5 631 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 RAP2CQ9Y3L5 183 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 MROH6A6NGR9 719 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 SNAP91O60641 907 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 PROCP04070 461 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 HIST1H2AGP0C0S8 130 aaPredicted RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 HIST1H2ADP20671 130 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 ITGB8P26012 769 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 BST1Q10588 318 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 QPCTQ16769 361 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 DUSP6Q16828 381 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 DNAL1Q4LDG9 190 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 FNDC3BQ53EP0 1204 aaKnown RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 CXorf57Q6NSI4 855 aaKnown RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 TPRG1Q6ZUI0 275 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 DNAJC1Q96KC8 554 aaKnown RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 HIST1H2AHQ96KK5 128 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 FOPNLQ96NB1 174 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 HIST1H2AJQ99878 128 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 H2AFJQ9BTM1 129 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 TM6SF2Q9BZW4 377 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 DRC3Q9H069 523 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 CXXC1Q9P0U4 656 aaPredicted RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 CDYLQ9Y232 598 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 HS3ST2Q9Y278 367 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 GLYATL1P3A0A0U1RQE8 302 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 HGSO14964 777 aaPredicted RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 PEX11BO96011 259 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 PENKP01210 267 aaPredicted RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 APODP05090 189 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 ARL1P40616 181 aaPredicted RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 CHRNA4P43681 627 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 NRIP1P48552 1158 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 STC1P52823 247 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 ACVR1Q04771 509 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 SEL1L3Q68CR1 1132 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 DENND5AQ6IQ26 1287 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 GDPD4Q6W3E5 623 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 ADAMTSL2Q86TH1 951 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 CHCHD4Q8N4Q1 142 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 MZB1Q8WU39 189 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 CMTM5Q96DZ9 223 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 ASB8Q9H765 288 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 CPSF2Q9P2I0 782 aaKnown RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 PCDHGC4Q9Y5F7 938 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 EDDM13A0A1B0GTR0 161 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 CCDC162PA2VCL2 907 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 AHSGP02765 367 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 ENO3P13929 434 aaPredicted RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 VCLP18206 1134 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 MZF1P28698 734 aaPredicted RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 VASPP50552 380 aaPredicted RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 MAP7Q14244 749 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 DLG2Q15700 870 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 METTL21CQ5VZV1 264 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 TTC23LQ6PF05 361 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 LINGO4Q6UY18 593 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 TRIM67Q6ZTA4 783 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 OTOAQ7RTW8 1153 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 RBM23Q86U06 439 aaKnown RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 TADA1Q96BN2 335 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 EXOC2Q96KP1 924 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 TRIB3Q96RU7 358 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 AGAP2Q99490 1192 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 WDR83Q9BRX9 315 aaKnown RBP8.39□□□□□ -1.07
USP54-203ENST00000418501 GTSE1Q9NYZ3 720 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 ZNF212Q9UDV6 495 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 DNAJC16Q9Y2G8 782 aa8.39□□□□□ -1.07
USP54-203ENST00000418501 HIDE1A8MVS5 230 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 RAD51BO15315 384 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 LMNAP02545 664 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 DLDP09622 509 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 ATXN1LP0C7T5 689 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 CCDC166P0CW27 439 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 EPCAMP16422 314 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 CD9P21926 228 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 DNAJB13P59910 316 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 RCN2Q14257 317 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 KCTD19Q17RG1 926 aaPredicted RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 RARS2Q5T160 578 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 TRMT11Q7Z4G4 463 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 RNF135Q8IUD6 432 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP54-203ENST00000418501 INPP5DQ92835 1189 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 NSL1Q96IY1 281 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 CCT7Q99832 543 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 TMEM120AQ9BXJ8 343 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ECT2Q9H8V3 914 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 138.4 ms