RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.59□□□□□ -0.55
USP4-204ENST00000416417 CD84Q9UIB8 345 aa11.59□□□□□ -0.55
USP4-204ENST00000416417 SSUH2Q9Y2M2 353 aa11.59□□□□□ -0.55
USP4-204ENST00000416417 PLEKHM1Q9Y4G2 1056 aa11.59□□□□□ -0.55
USP4-204ENST00000416417 LOXL2Q9Y4K0 774 aa11.59□□□□□ -0.55
USP4-204ENST00000416417 NPIPB15A6NHN6 443 aaPredicted RBP11.58□□□□□ -0.56
USP4-204ENST00000416417 EIF3CLB5ME19 914 aaKnown RBP11.58□□□□□ -0.56
USP4-204ENST00000416417 K7ENP7 123 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 MAFKO60675 156 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 MAP3K6O95382 1288 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 CD48P09326 243 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 GZMAP12544 262 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 VIPR1P32241 457 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 PRKCIP41743 596 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 GNPDA1P46926 289 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 HCAR3P49019 387 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 OR1D5P58170 312 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 POLR2LP62875 67 aaKnown RBP11.58□□□□□ -0.56
USP4-204ENST00000416417 RHDQ02161 417 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 HLTFQ14527 1009 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP4-204ENST00000416417 AMZ1Q400G9 498 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 FILIP1LQ4L180 1135 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 C14orf28Q4W4Y0 310 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 CERCAMQ5T4B2 595 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 CAVIN1Q6NZI2 390 aaKnown RBP11.58□□□□□ -0.56
USP4-204ENST00000416417 INO80CQ6PI98 192 aaPredicted RBP11.58□□□□□ -0.56
USP4-204ENST00000416417 OGFOD3Q6PK18 319 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 DOK6Q6PKX4 331 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 TMCO3Q6UWJ1 677 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 Q6ZVL8 140 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 SPRED1Q7Z699 444 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 NUDCD1Q96RS6 583 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 EIF3CQ99613 913 aaKnown RBP11.58□□□□□ -0.56
USP4-204ENST00000416417 THAP2Q9H0W7 228 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 SEMA6CQ9H3T2 930 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 RDH14Q9HBH5 336 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 PCDH18Q9HCL0 1135 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 ST14Q9Y5Y6 855 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 SCINQ9Y6U3 715 aa11.58□□□□□ -0.56
USP4-204ENST00000416417 PRAMEF33A0A0G2JMD5 474 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 A0A1B0GTH6 734 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 CFAP69A5D8W1 941 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 HTRA2O43464 458 aaPredicted RBP11.57□□□□□ -0.56
USP4-204ENST00000416417 B4GAT1O43505 415 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 PRAMEF10O60809 474 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 HEXIM1O94992 359 aaKnown RBP11.57□□□□□ -0.56
USP4-204ENST00000416417 MBD3O95983 291 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 FGF1P05230 155 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 CEACAM5P06731 702 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 PDHA1P08559 390 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 JMJD7P0C870 316 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 GLB1P16278 677 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 CR2P20023 1033 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 GJC1P36383 396 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 ARL4AP40617 200 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 RENBPP51606 427 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 MAPK10P53779 464 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 ARHGEF7Q14155 803 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 IHHQ14623 411 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 DPYSL2Q16555 572 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 TDRD12Q587J7 1177 aaKnown RBP11.57□□□□□ -0.56
USP4-204ENST00000416417 PHF19Q5T6S3 580 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 PPP1R2P3Q6NXS1 205 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 USP53Q70EK8 1073 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 TRIM74Q86UV6 250 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 VASH2Q86V25 355 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 ZFAND4Q86XD8 727 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 ATPAF2Q8N5M1 289 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 LSM14AQ8ND56 463 aaKnown RBP11.57□□□□□ -0.56
USP4-204ENST00000416417 CPLX3Q8WVH0 158 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 ZNF599Q96NL3 588 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 STRADBQ9C0K7 418 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 NAT10Q9H0A0 1025 aaKnown RBP11.57□□□□□ -0.56
USP4-204ENST00000416417 ISCUQ9H1K1 167 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 NT5MQ9NPB1 228 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 FOXJ2Q9P0K8 574 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 SUFUQ9UMX1 484 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 TMEM98Q9Y2Y6 226 aa11.57□□□□□ -0.56
USP4-204ENST00000416417 TRBV23OR9-2A0A075B6M9 112 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 A0A1W2PQC6 194 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 SMTNL1A8MU46 457 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 TNFRSF10CO14798 259 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 SERPINC1P01008 464 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 MYCLP1P12525 358 aaPredicted RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 CCNB1P14635 433 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 KELP23276 732 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 ALDH4A1P30038 563 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 PCK1P35558 622 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 SSR1P43307 286 aaKnown RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 ZNF165P49910 485 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 B4GALNT1Q00973 533 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 SLC25A11Q02978 314 aaKnown RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 ZFP36L1Q07352 338 aaKnown RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 ITKQ08881 620 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 ATP13A4Q4VNC1 1196 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 HGSNATQ68CP4 663 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 RAET1GQ6H3X3 334 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 SLC30A9Q6PML9 568 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 MARK2Q7KZI7 788 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms