RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ZNF333Q96JL9 665 aa20.14■□□□□ 0.81
USP39-204ENST00000409766 SMIM14Q96QK8 99 aa20.14■□□□□ 0.81
USP39-204ENST00000409766 POPDC3Q9HBV1 291 aa20.14■□□□□ 0.81
USP39-204ENST00000409766 CYP4F12Q9HCS2 524 aa20.14■□□□□ 0.81
USP39-204ENST00000409766 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.14■□□□□ 0.81
USP39-204ENST00000409766 INTS10Q9NVR2 710 aaKnown RBP20.14■□□□□ 0.81
USP39-204ENST00000409766 C15orf41Q9Y2V0 281 aa20.14■□□□□ 0.81
USP39-204ENST00000409766 DENND4CQ5VZ89 1909 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 C2orf81A6NN90 581 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 ANKRD66B4E2M5 251 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 NEMP1O14524 444 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 LUC7L3O95232 432 aaKnown RBP20.13■□□□□ 0.81
USP39-204ENST00000409766 TIMP1P01033 207 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 SLC4A1P02730 911 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 PRSS56P0CW18 603 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 KCNC1P48547 511 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 CCNG1P51959 295 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 LRRC26Q2I0M4 334 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 GPR65Q8IYL9 337 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 TMA16Q96EY4 203 aaKnown RBP20.13■□□□□ 0.81
USP39-204ENST00000409766 CLPTM1LQ96KA5 538 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 PPP1R36Q96LQ0 422 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 ZBED2Q9BTP6 218 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 ADGRE3Q9BY15 652 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 ALG9Q9H6U8 611 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 LHX3Q9UBR4 397 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 CPQQ9Y646 472 aa20.13■□□□□ 0.81
USP39-204ENST00000409766 H0Y3Z8 333 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 PMLP29590 882 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 SLC25A3Q00325 362 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 TRAF2Q12933 501 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 NCEH1Q6PIU2 408 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 AFTPHQ6ULP2 937 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 SLC22A9Q8IVM8 553 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 FAM217AQ8IXS0 508 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 ALG14Q96F25 216 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 AARSD1Q9BTE6 412 aaKnown RBP20.12■□□□□ 0.81
USP39-204ENST00000409766 VPS28Q9UK41 221 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 PTPRSQ13332 1948 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 TRIM43BA6NCK2 446 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 TMEM233B4DJY2 109 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 EFCAB14O75071 495 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 HNRNPLP14866 589 aaKnown RBP eCLIP20.12■□□□□ 0.81
USP39-204ENST00000409766 SP100P23497 879 aaPredicted RBP20.12■□□□□ 0.81
USP39-204ENST00000409766 PPM1AP35813 382 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 SH2D4BQ5SQS7 431 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 ACAD11Q709F0 780 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 NET1Q7Z628 596 aaPredicted RBP20.12■□□□□ 0.81
USP39-204ENST00000409766 WFDC5Q8TCV5 224 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 TRIM43Q96BQ3 446 aaPredicted RBP20.12■□□□□ 0.81
USP39-204ENST00000409766 PTERQ96BW5 349 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 YME1L1Q96TA2 773 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 CCDC28BQ9BUN5 200 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 DNMT3BQ9UBC3 853 aaKnown RBP20.12■□□□□ 0.81
USP39-204ENST00000409766 SLC7A8Q9UHI5 535 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 CDYLQ9Y232 598 aa20.12■□□□□ 0.81
USP39-204ENST00000409766 GBF1Q92538 1859 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 A0A088AWK7 358 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 LOC100653049A0A140TA62 436 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 KRT34O76011 436 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 PENKP01210 267 aaPredicted RBP20.11■□□□□ 0.81
USP39-204ENST00000409766 COX4I1P13073 169 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 CD1DP15813 335 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 ZNF37AP17032 561 aaPredicted RBP20.11■□□□□ 0.81
USP39-204ENST00000409766 LPOP22079 712 aaPredicted RBP20.11■□□□□ 0.81
USP39-204ENST00000409766 PLK1P53350 603 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 PDCD2Q16342 344 aaPredicted RBP20.11■□□□□ 0.81
USP39-204ENST00000409766 FRMD7Q6ZUT3 714 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 GAREM2Q75VX8 874 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 PHF21BQ96EK2 531 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 TCF12Q99081 682 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 ZNF385DQ9H6B1 395 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 POLR3BQ9NW08 1133 aaPredicted RBP20.11■□□□□ 0.81
USP39-204ENST00000409766 VPS51Q9UID3 782 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 ASB3Q9Y575 518 aa20.11■□□□□ 0.81
USP39-204ENST00000409766 TYW5A2RUC4 315 aaKnown RBP20.1■□□□□ 0.81
USP39-204ENST00000409766 F8W8V4 182 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 TGM5O43548 720 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 CNPP09543 421 aaKnown RBP20.1■□□□□ 0.81
USP39-204ENST00000409766 IMPDH1P20839 514 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 GABRR2P28476 465 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 CDC25CP30307 473 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 CSKP41240 450 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 SULT2A1Q06520 285 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 GALNT1Q10472 559 aaPredicted RBP20.1■□□□□ 0.81
USP39-204ENST00000409766 CPSF7Q8N684 471 aaKnown RBP20.1■□□□□ 0.81
USP39-204ENST00000409766 CFAP61Q8NHU2 1237 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 LPGAT1Q92604 370 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 MAELQ96JY0 434 aaKnown RBP20.1■□□□□ 0.81
USP39-204ENST00000409766 LENG8Q96PV6 779 aaPredicted RBP20.1■□□□□ 0.81
USP39-204ENST00000409766 ZBP1Q9H171 429 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 PCDH10Q9P2E7 1040 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 SSX2IPQ9Y2D8 614 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 ACRP10323 421 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 ABL2P42684 1182 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 NFKB2Q00653 900 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 CREMQ03060 361 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 CDH18Q13634 790 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 L3HYPDHQ96EM0 354 aa20.1■□□□□ 0.81
USP39-204ENST00000409766 EML4Q9HC35 981 aaKnown RBP20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms