RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 DCLRE1AQ6PJP8 1040 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 HEATR4Q86WZ0 1026 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 PM20D2Q8IYS1 436 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 C2orf15Q8WU43 125 aaKnown RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MED8Q96G25 268 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CLPTM1LQ96KA5 538 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TKTL2Q9H0I9 626 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 POLD4Q9HCU8 107 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 OR12D3Q9UGF7 316 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ZNF780BQ9Y6R6 833 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 FADS2P1A8MWK0 482 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SLC22A1O15245 554 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 CLDN11O75508 207 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 INSRRP14616 1297 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 HTR1BP28222 390 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PSEN2P49810 448 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 NAGLUP54802 743 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 NOMO3P69849 1222 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 RPP38P78345 283 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 LARS2Q15031 903 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 KLHL26Q53HC5 615 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 CAPN13Q6MZZ7 669 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SPESP1Q6UW49 350 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 CAMKK1Q8N5S9 505 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SPPL2BQ8TCT7 592 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 CCDC107Q8WV48 283 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PPCDCQ96CD2 204 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 AIF1LQ9BQI0 150 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 CRISPLD1Q9H336 500 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TRPV5Q9NQA5 729 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 DDX18Q9NVP1 670 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TBC1D14Q9P2M4 693 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PCDHGC3Q9UN70 934 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 VWA7Q9Y334 891 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PLLPQ9Y342 182 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PCDHGA4Q9Y5G9 962 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 FADS3Q9Y5Q0 445 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 AK9Q5TCS8 1911 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 UGT2B17O75795 530 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ENO2P09104 434 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 DCKP27707 260 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 CDC25CP30307 473 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SRSF11Q05519 484 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 BLMHQ13867 455 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ZFP69Q49AA0 526 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 LIN52Q52LA3 116 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TUBA3EQ6PEY2 450 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SYCE2Q6PIF2 218 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PRELID2Q8N945 189 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 STYXQ8WUJ0 223 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 RERGQ96A58 199 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 CPNE2Q96FN4 548 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 RETREG1Q9H6L5 497 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 E9PCH4 1651 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 LACTBL1A8MY62 500 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PSMD10O75832 226 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PTPN9P43378 593 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 IDH2P48735 452 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ALDH3A2P51648 485 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 FKBP1BP68106 108 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TUBA1BP68363 451 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 USP41Q3LFD5 358 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PPM1LQ5SGD2 360 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ADGRD1Q6QNK2 874 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ZYG11AQ6WRX3 759 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 UNC5AQ6ZN44 842 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 QSOX2Q6ZRP7 698 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TUBA1AQ71U36 451 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ZNF572Q7Z3I7 529 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 MON1AQ86VX9 555 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 GATAD2AQ86YP4 633 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 BPIFB6Q8NFQ5 453 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SPATA20Q8TB22 786 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ASZ1Q8WWH4 475 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 COPS8Q99627 209 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ZFYVE1Q9HBF4 777 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TMEM27Q9HBJ8 222 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TMEM138Q9NPI0 162 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 GNEQ9Y223 722 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 DHRS7Q9Y394 339 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TRAF6Q9Y4K3 522 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SLC15A5A6NIM6 579 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 AKAP8O43823 692 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 B4GALT4O60513 344 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 RPP40O75818 363 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 NADKO95544 446 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 NPPAP01160 153 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 C8BP07358 591 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ANXA8P13928 327 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 CCNCP24863 283 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ZNF311Q5JNZ3 666 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PIK3R6Q5UE93 754 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ZCCHC12Q6PEW1 402 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 RBM44Q6ZP01 1051 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PTCHD4Q6ZW05 846 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 USP43Q70EL4 1123 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 OR4L1Q8NH43 312 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 NARS2Q96I59 477 aaKnown RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 FAM84AQ96KN4 292 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms