RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 MTSS1LQ765P7 747 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 GPR150Q8NGU9 434 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 HDAC10Q969S8 669 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 ELSPBP1Q96BH3 223 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 FAM83CQ9BQN1 747 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 TNKS2Q9H2K2 1166 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 CORO1CQ9ULV4 474 aaPredicted RBP18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 PKP3Q9Y446 797 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 KIF26AQ9ULI4 1882 aaPredicted RBP18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 TPP1O14773 563 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 STX7O15400 261 aaKnown RBP18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 TULP3O75386 442 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 PDHA1P08559 390 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 DLDP09622 509 aaKnown RBP18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 OGNP20774 298 aaKnown RBP18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 FCARP24071 287 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 PSMA3P25788 255 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 ARNTP27540 789 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 STK19P49842 368 aaPredicted RBP18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 CLCN5P51795 746 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 ZNF140P52738 457 aaPredicted RBP18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 SLC12A2P55011 1212 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 KCNJ2P63252 427 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 TAF1BQ53T94 588 aaPredicted RBP18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 TRIM68Q6AZZ1 485 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 FSTL4Q6MZW2 842 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 ZC3HC1Q86WB0 502 aaKnown RBP18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 KDM1BQ8NB78 822 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 UCMAQ8WVF2 138 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 TSPAN17Q96FV3 270 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 LRIG1Q96JA1 1093 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 GPR22Q99680 433 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 GPR63Q9BZJ6 419 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 CIPCQ9C0C6 399 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 EBF3Q9H4W6 596 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 PCMTD2Q9NV79 361 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 CLDND1Q9NY35 253 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 KCNK4Q9NYG8 393 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 SLC17A6Q9P2U8 582 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 TLK1Q9UKI8 766 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 PLA2G4CQ9UP65 541 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 ANKRD6Q9Y2G4 727 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 ARL5AQ9Y689 179 aa18.22■□□□□ 0.51
CCDC88C-203ENST00000389856 HMX2A2RU54 273 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 WASH3PC4AMC7 463 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 GOLGA8TH3BQL2 631 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 CISD3P0C7P0 127 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 PSMC3P17980 439 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 BGNP21810 368 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 SLC1A2P43004 574 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 CCNHP51946 323 aaPredicted RBP18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 FASTKD1Q53R41 847 aaKnown RBP18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 AARS2Q5JTZ9 985 aaKnown RBP18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 TANGO2Q6ICL3 276 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 CHRDL2Q6WN34 429 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 CAMK1DQ8IU85 385 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 DCLK2Q8N568 766 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 OR4L1Q8NH43 312 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 DNAJC1Q96KC8 554 aaKnown RBP18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 OSBPL1AQ9BXW6 950 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 S1PR5Q9H228 398 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 CATSPERZQ9NTU4 200 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 CLEC1BQ9P126 229 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 PDE4DIPQ5VU43 2346 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 CHD9Q3L8U1 2897 aa18.21■□□□□ 0.51
CCDC88C-203ENST00000389856 ECI2O75521 394 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 ZNF821O75541 412 aaPredicted RBP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 ALDOAP04075 364 aaKnown RBP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 BPGMP07738 259 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 ARSAP15289 507 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CCND1P24385 295 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CRABP2P29373 138 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 ABL2P42684 1182 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 LEPRP48357 1165 aaKnown RBP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 KRT72Q14CN4 511 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 SMAD1Q15797 465 aaKnown RBP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 GEN1Q17RS7 908 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 LRIT3Q3SXY7 679 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 VITQ6UXI7 678 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 EP400NLQ6ZTU2 488 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 USP45Q70EL2 814 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CLNKQ7Z7G1 428 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 NUDCD3Q8IVD9 361 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 ETFBKMTQ8IXQ9 262 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 PIH1D2Q8WWB5 315 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CDKN2AIPNLQ96HQ2 116 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 TCF12Q99081 682 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 MCMBPQ9BTE3 642 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 SLC13A1Q9BZW2 595 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 SUV39H2Q9H5I1 410 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 SNX15Q9NRS6 342 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 ZNF711Q9Y462 761 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 SPO11Q9Y5K1 396 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 A0A0J9YYE9 177 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 CD3EAPO15446 510 aaKnown RBP18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 HAUS5O94927 633 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 TRBC1P01850 177 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 KRT16P08779 473 aa18.2■□□□□ 0.5
CCDC88C-203ENST00000389856 PIRTP0C851 137 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms