RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 MRNIPQ6NTE8 343 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 Q7L0L9 218 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 LYSMD3Q7Z3D4 306 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 STRA8Q7Z7C7 330 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 DSG4Q86SJ6 1040 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 CILP2Q8IUL8 1156 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 SRRM1Q8IYB3 904 aaKnown RBP14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 OR4K2Q8NGD2 314 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 TTC8Q8TAM2 541 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 GRIN3AQ8TCU5 1115 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 DTX3LQ8TDB6 740 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 EZH1Q92800 747 aaPredicted RBP14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 EID2BQ96D98 161 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 MRRFQ96E11 262 aaKnown RBP14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 KLHL32Q96NJ5 620 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 SMIM14Q96QK8 99 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 TCF12Q99081 682 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 ZFYVE1Q9HBF4 777 aa14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 FBRSL1Q9HCM7 1045 aaKnown RBP14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 CORO1CQ9ULV4 474 aaPredicted RBP14.93□□□□□ -0.02
CCDC88C-202ENST00000334448 CCDC78A2IDD5 438 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 NPIPB15A6NHN6 443 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 LOC730098B7Z3J9 87 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 K7EQS6 105 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 ALPIP09923 528 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 BRAFP15056 766 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 TIMP2P16035 220 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 DRD1P21728 446 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 FOXN2P32314 431 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 SOX9P48436 509 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 CD151P48509 253 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 XIAPP98170 497 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 CAMK2GQ13555 558 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 ARSIQ5FYB1 569 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 ZDHHC20Q5W0Z9 365 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 TXNDC11Q6PKC3 985 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 CRTC1Q6UUV9 634 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 BANPQ8N9N5 519 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 OR4L1Q8NH43 312 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 CENPTQ96BT3 561 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 VPS39Q96JC1 886 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 SERAC1Q96JX3 654 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 SMC6Q96SB8 1091 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 FAM129BQ96TA1 746 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 GABRG3Q99928 467 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 GPR63Q9BZJ6 419 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 FBRSQ9HAH7 460 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 INTS10Q9NVR2 710 aaKnown RBP14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 PKP3Q9Y446 797 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 STON1Q9Y6Q2 735 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 PIAS3Q9Y6X2 628 aa14.92□□□□□ -0.02
CCDC88C-202ENST00000334448 C1orf232A0A0U1RR37 186 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 A0A1W2PPM1 405 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 RGSL1A5PLK6 1076 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 FAM47DPA6NHR8 397 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 POLR3GO15318 223 aaPredicted RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 CD3EAPO15446 510 aaKnown RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 BNIP3LO60238 219 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 GOT2P00505 430 aaKnown RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 AHSGP02765 367 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 ALDOAP04075 364 aaKnown RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 CYP2A6P11509 494 aaPredicted RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 BMP1P13497 986 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 CREB1P16220 341 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 CTPS1P17812 591 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 KRT4P19013 534 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 LHCGRP22888 699 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 SP100P23497 879 aaPredicted RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 VIPR1P32241 457 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 HPDP32754 393 aaPredicted RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 SERPINB8P50452 374 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 CLCN5P51795 746 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 STC1P52823 247 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 DCDC1P59894 354 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 SKIV2LQ15477 1246 aaKnown RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 CCDC85BQ15834 202 aaPredicted RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 AARS2Q5JTZ9 985 aaKnown RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 FSTL4Q6MZW2 842 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 DPPA4Q7L190 304 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 DENND6AQ8IWF6 608 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 STK40Q8N2I9 435 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 DEFB123Q8N688 67 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 OR6P1Q8NGX9 317 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 MTG2Q9H4K7 406 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 PRSS16Q9NQE7 514 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 CATSPERZQ9NTU4 200 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 MARCH4Q9P2E8 410 aaPredicted RBP14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 B4GALT6Q9UBX8 382 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 LIMD1Q9UGP4 676 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 ADAM21Q9UKJ8 722 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 VPS9D1Q9Y2B5 631 aa14.91□□□□□ -0.02
CCDC88C-202ENST00000334448 XIRP2A4UGR9 3374 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 TRBV5-4A0A0C4DH59 114 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 TMEM120BA0PK00 339 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 C16orf96A6NNT2 1141 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 AGAP14A8MT82 685 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 H0Y858 1186 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 GOLGA8TH3BQL2 631 aa14.9□□□□□ -0.02
CCDC88C-202ENST00000334448 PSMD11O00231 422 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms