RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ZNF624Q9P2J8 865 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ADGRE2Q9UHX3 823 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 FBXL21Q9UKT6 434 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CLEC4AQ9UMR7 237 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 USP18Q9UMW8 372 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 KDM3BQ7LBC6 1761 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 hCG_1818297A0A087WSY0 165 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 IQCMA0A1B0GVH7 501 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 TRIM43BA6NCK2 446 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CYP26A1O43174 497 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 KRT36O76013 467 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CPB1P15086 417 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 TAS2R43P59537 309 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 PPM1LQ5SGD2 360 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 METAP1DQ6UB28 335 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ATP6V0D2Q8N8Y2 350 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 FBXO22Q8NEZ5 403 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 OR6B3Q8NGW1 331 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 MAGEE2Q8TD90 523 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 C10orf82Q8WW14 230 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 FAM151AQ8WW52 585 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF341Q9BYN7 854 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CYP4F11Q9HBI6 524 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 RHBDL2Q9NX52 303 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 RGPD1P0DJD0 1748 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF185O15231 689 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 KCNH1O95259 989 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 WDPCPO95876 746 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 OTCP00480 354 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 OAS1P00973 400 aaKnown RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CD72P21854 359 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ABL2P42684 1182 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 MAGEA6P43360 314 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 TTPAP49638 278 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 BST1Q10588 318 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 SWI5Q1ZZU3 235 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 EPC2Q52LR7 807 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 SLC35F1Q5T1Q4 408 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 RNASEH2BQ5TBB1 312 aaKnown RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ALKBH2Q6NS38 261 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ECHDC2Q86YB7 292 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 SLC43A2Q8N370 569 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 RNF25Q96BH1 459 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF669Q96BR6 464 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 MASTLQ96GX5 879 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CDC6Q99741 560 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 TNFRSF10DQ9UBN6 386 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 DNAJB9Q9UBS3 223 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 TNFSF13BQ9Y275 285 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ASCC3Q8N3C0 2202 aaKnown RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 LRP6O75581 1613 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 FOXN3O00409 490 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 SGTAO43765 313 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 PRAF2O60831 178 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 PRKAR2AP13861 404 aaKnown RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CD44P16070 742 aaKnown RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CASP4P49662 377 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 MAPK10P53779 464 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 PTPN11Q06124 597 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 NFYCQ13952 458 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 LRRC14Q15048 493 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 PRKD1Q15139 912 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 LRRC41Q15345 812 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ZACNQ401N2 412 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CCNJQ5T5M9 372 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 VWA5B1Q5TIE3 1220 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CCDC81Q6ZN84 652 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 C3orf67Q6ZVT6 689 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CXXC5Q7LFL8 322 aaKnown RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 OR4A15Q8NGL6 344 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 KAZALD1Q96I82 304 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 SCGB3A2Q96PL1 93 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ERMAPQ96PL5 475 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 UCK2Q9BZX2 261 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 DEFB129Q9H1M3 183 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 SLA2Q9H6Q3 261 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 RDH8Q9NYR8 311 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 PCDHB1Q9Y5F3 818 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 DOCK9Q9BZ29 2069 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 BHMG1C9JSJ3 638 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 PPEF1O14829 653 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 SLC28A2O43868 658 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 ATP6V1G1O75348 118 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 SLC25A12O75746 678 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 GH2P01242 217 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 PEX3P56589 373 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 DPYSL3Q14195 570 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 HSDL1Q3SXM5 330 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 N4BP2L1Q5TBK1 243 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 MEDAGQ5VYS4 303 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 PTRHD1Q6GMV3 140 aaKnown RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 UBE2Q1Q7Z7E8 422 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 FAM35AQ86V20 835 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 LACC1Q8IV20 430 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 SLC7A14Q8TBB6 771 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 NTAN1Q96AB6 310 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 FAM120BQ96EK7 910 aaKnown RBP5.25□□□□□ -1.57
SCN1A-201ENST00000303395 LRRC46Q96FV0 321 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 CERS2Q96G23 380 aa5.25□□□□□ -1.57
SCN1A-201ENST00000303395 TMEM117Q9H0C3 514 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms