RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TMTC4Q5T4D3 741 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 CATSPER4Q7RTX7 472 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 TMEM135Q86UB9 458 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 CUZD1Q86UP6 607 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 ABI1Q8IZP0 508 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 TERB1Q8NA31 727 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 TRPV3Q8NET8 790 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 SLC16A10Q8TF71 515 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 NUDT8Q8WV74 236 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 GLMNQ92990 594 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 BCO2Q9BYV7 579 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 SMURF2Q9HAU4 748 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 BAG5Q9UL15 447 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 ACOT9Q9Y305 439 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 IFT52Q9Y366 437 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 PCDHGA8Q9Y5G5 932 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 FXYD1O00168 92 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 MDM4O15151 490 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 ZBTB24O43167 697 aaPredicted RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 PEX10O60683 326 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 CCND2P30279 289 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 RFC2P35250 354 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 DPYSL2Q16555 572 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 ADPRMQ3LIE5 342 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.5□□□□□ -0.25
SKA3-201ENST00000298260 JADE1Q6IE81 842 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 C8orf82Q6P1X6 216 aaPredicted RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 USP51Q70EK9 711 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 MMAAQ8IVH4 418 aaKnown RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 SCML4Q8N228 414 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 PACRGLQ8N7B6 248 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 RDH11Q8TC12 318 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 ZNF486Q96H40 463 aaPredicted RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 OSBPL10Q9BXB5 764 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 ZNF302Q9NR11 478 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 INVSQ9Y283 1065 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 PCDHB3Q9Y5E6 796 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 A8MV72 311 aaPredicted RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 SLCO1B7G3V0H7 640 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 TIMM44O43615 452 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 XPNPEP2O43895 674 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 ABCB7O75027 752 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 PARNO95453 639 aaKnown RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 DLGAP3O95886 979 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 PRKCBP05771 671 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 SLC6A2P23975 617 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 CRHBPP24387 322 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 PIGAP37287 484 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 GP2P55259 537 aaKnown RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 NCS1P62166 190 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 PLIN5Q00G26 463 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 NAB1Q13506 487 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 LAPTM5Q13571 262 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 GRB7Q14451 532 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 FAM83EQ2M2I3 478 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 CTU2Q2VPK5 515 aaKnown RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 FAM214AQ32MH5 1076 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 KIAA0408Q6ZU52 694 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 FRA10AC1Q70Z53 315 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 AKAP14Q86UN6 197 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 STK32CQ86UX6 486 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 TRAPPC12Q8WVT3 735 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 TBCBQ99426 244 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 ARPC5LQ9BPX5 153 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 C2orf40Q9H1Z8 148 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 CD320Q9NPF0 282 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 MRPL40Q9NQ50 206 aaKnown RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 PAK1IP1Q9NWT1 392 aaPredicted RBP13.5□□□□□ -0.25
SKA3-201ENST00000298260 PCM1Q15154 2024 aa13.5□□□□□ -0.25
SKA3-201ENST00000298260 LRRC14BA6NHZ5 514 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 INO80B-WBP1J3KQ70 363 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 KCNK2O95069 426 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 TAS2R39P59534 338 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 ECT2LQ008S8 904 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SLC6A3Q01959 620 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SLC12A1Q13621 1099 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 TXNDC11Q6PKC3 985 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SAMD7Q7Z3H4 446 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 ERO1BQ86YB8 467 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 CLEC4FQ8N1N0 589 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 LILRB4Q8NHJ6 448 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 RPL3LQ92901 407 aaKnown RBP13.49□□□□□ -0.25
SKA3-201ENST00000298260 EFHD2Q96C19 240 aaPredicted RBP13.49□□□□□ -0.25
SKA3-201ENST00000298260 OTUD5Q96G74 571 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 GPR22Q99680 433 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 CXCL16Q9H2A7 254 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SLC2A6Q9UGQ3 507 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 CCDC162PA2VCL2 907 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 LACTBL1A8MY62 500 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SUPT20HL2P0C7V6 817 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SERPINB1P30740 379 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 MAP2K4P45985 399 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 POU6F1Q14863 301 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SUPT20HL1Q3ZLR7 823 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 ZNF789Q5FWF6 425 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 FAM45BPQ6NSW5 357 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 RBM23Q86U06 439 aaKnown RBP13.49□□□□□ -0.25
SKA3-201ENST00000298260 NIM1KQ8IY84 436 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 DEPDC4Q8N2C3 294 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 FAM45AQ8TCE6 357 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms