RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 GRM6O15303 877 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SLC22A3O75751 556 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3HP0C7X1 549 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SLC7A2P52569 658 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3GQ6DHY5 549 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3CQ6IPX1 549 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 CRTC3Q6UUV7 619 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 GALNT7Q86SF2 657 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3Q8IZP1 549 aaPredicted RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 FATE1Q969F0 183 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SNX7Q9UNH6 387 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 ATXN2Q99700 1313 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 UGT2B17O75795 530 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SCGNO76038 276 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 IL1BP01584 269 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SUZ12Q15022 739 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 KLHL26Q53HC5 615 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 ZHX1-C8orf76Q96EF9 292 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TAPBPLQ9BX59 468 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 ZFP14Q9HCL3 533 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 ATP6V1G2O95670 118 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SRSF11Q05519 484 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 ACVR2BQ13705 512 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PRCCQ92733 491 aaPredicted RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 TFR2Q9UP52 801 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 LRRIQ1Q96JM4 1722 aa9.34□□□□□ -0.92
CUX1-201ENST00000292535 ALDH3A2P51648 485 aa9.34□□□□□ -0.92
CUX1-201ENST00000292535 AIF1P55008 147 aa9.34□□□□□ -0.92
CUX1-201ENST00000292535 SWI5Q1ZZU3 235 aa9.34□□□□□ -0.92
CUX1-201ENST00000292535 ASF1AQ9Y294 204 aa9.34□□□□□ -0.92
CUX1-201ENST00000292535 MYPNQ86TC9 1320 aa9.34□□□□□ -0.92
CUX1-201ENST00000292535 H3BUI4 141 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 SERPINA6P08185 405 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 IL12AP29459 219 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 MECP2P51608 486 aaKnown RBP9.33□□□□□ -0.92
CUX1-201ENST00000292535 ATP1A4Q13733 1029 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 POTEHQ6S545 545 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 KBTBD2Q8IY47 623 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 DEFB106AQ8N104 65 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 POU5F2Q8N7G0 328 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 OR10G6Q8NH81 332 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 CHID1Q9BWS9 393 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 TBC1D14Q9P2M4 693 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 MRPS17Q9Y2R5 130 aaKnown RBP9.33□□□□□ -0.92
CUX1-201ENST00000292535 ZC3H13Q5T200 1668 aaKnown RBP9.33□□□□□ -0.92
CUX1-201ENST00000292535 AZIN1O14977 448 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 OR5F1O95221 314 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 CAPN13Q6MZZ7 669 aaPredicted RBP9.33□□□□□ -0.92
CUX1-201ENST00000292535 RDH11Q8TC12 318 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 COPS8Q99627 209 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 ZNF670Q9BS34 389 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 BRD9Q9H8M2 597 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 H0Y858 1186 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 ZC3H12AQ5D1E8 599 aaKnown RBP9.33□□□□□ -0.92
CUX1-201ENST00000292535 ZBTB10Q96DT7 871 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 ADAM2Q99965 735 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 CHCHD6Q9BRQ6 235 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 ERVW-1Q9UQF0 538 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 AK5Q9Y6K8 562 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 ACACAQ13085 2346 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 ITPKBP27987 946 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 CXCR3P49682 368 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 CELF3Q5SZQ8 465 aaKnown RBP9.33□□□□□ -0.92
CUX1-201ENST00000292535 PTF1AQ7RTS3 328 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 IQCF2Q8IXL9 164 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 OR2AJ1Q8NGZ0 328 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 HDAC7Q8WUI4 952 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 PCDH12Q9NPG4 1184 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 XPR1Q9UBH6 696 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 PCDHGB1Q9Y5G3 927 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 C1orf167Q5SNV9 1468 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 A0A1W2PQ67 120 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 AHCYL1O43865 530 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 FGBP02675 491 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 PIK3R3Q92569 461 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 SLC4A9Q96Q91 983 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 A8MX80 341 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 E5RJQ4 531 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 CLDN4O14493 209 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 TNFAIP8L3Q5GJ75 292 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 ERICH5Q6P6B1 374 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 MON1AQ86VX9 555 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 SLC41A1Q8IVJ1 513 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 LEMD2Q8NC56 503 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 FAM81AQ8TBF8 368 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 GAL3ST3Q96A11 431 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 TMEM27Q9HBJ8 222 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 ETNK2Q9NVF9 386 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 CTDNEP1O95476 244 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 SMIM10L2AP0DMW4 78 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 SMIM10L2BP0DMW5 78 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 LPOP22079 712 aaPredicted RBP9.33□□□□□ -0.92
CUX1-201ENST00000292535 IGFBP4P22692 258 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 NR4A1P22736 598 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 FAAP100Q0VG06 881 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 GCNT6Q5T4J0 391 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 DNASE1L2Q92874 299 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 GAD1Q99259 594 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 CORO1BQ9BR76 489 aa9.33□□□□□ -0.92
CUX1-201ENST00000292535 MUC13Q9H3R2 512 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms