RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 TREX1Q9NSU2 369 aa9.56□□□□□ -0.88
PDLIM5-223ENST00000627587 SENP1Q9P0U3 644 aa9.56□□□□□ -0.88
PDLIM5-223ENST00000627587 SLC2A6Q9UGQ3 507 aa9.56□□□□□ -0.88
PDLIM5-223ENST00000627587 ZNF180Q9UJW8 692 aa9.56□□□□□ -0.88
PDLIM5-223ENST00000627587 TCAF1Q9Y4C2 921 aa9.56□□□□□ -0.88
PDLIM5-223ENST00000627587 PCDHGA5Q9Y5G8 931 aa9.56□□□□□ -0.88
PDLIM5-223ENST00000627587 ACTL7BQ9Y614 415 aa9.56□□□□□ -0.88
PDLIM5-223ENST00000627587 RALGAPA1Q6GYQ0 2036 aa9.56□□□□□ -0.88
PDLIM5-223ENST00000627587 ZNF106Q9H2Y7 1883 aaKnown RBP9.56□□□□□ -0.88
PDLIM5-223ENST00000627587 IQANK1A0A1B0GTG1 560 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 CCDC78A2IDD5 438 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 A6NNZ2 444 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 NEDD8-MDP1E9PL57 170 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 TRIM24O15164 1050 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 INSIG1O15503 277 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 PRKCGP05129 697 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 MDH1P40925 334 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 CTSOP43234 321 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 ARCN1P48444 511 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 SCNN1BP51168 640 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 GRSF1Q12849 480 aaKnown RBP eCLIP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 PON2Q15165 354 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 SLC14A2Q15849 920 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 ST3GAL2Q16842 350 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 TUBB8Q3ZCM7 444 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 ARMC3Q5W041 872 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 TMEM215Q68D42 235 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 PKN3Q6P5Z2 889 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 ZNF449Q6P9G9 518 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 FAM160A2Q8N612 972 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 PTCD2Q8WV60 388 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 GAB3Q8WWW8 586 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 FEM1CQ96JP0 617 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 SERAC1Q96JX3 654 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 SMIM14Q96QK8 99 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 NUDCD1Q96RS6 583 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 AGAP2Q99490 1192 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 SELENOSQ9BQE4 189 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 BBS2Q9BXC9 721 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 ABCB8Q9NUT2 735 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 PSD3Q9NYI0 1048 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 MARK1Q9P0L2 795 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 FCF1Q9Y324 198 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 TMEM120BA0PK00 339 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 MROH6A6NGR9 719 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 OTOL1A6NHN0 477 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 LDB2O43679 373 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 TYROBPO43914 113 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 EPOP01588 193 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 PDHA1P08559 390 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 TYRP14679 529 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 CHN1P15882 459 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 HLA-DPA1P20036 260 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 SOX9P48436 509 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 STK19P49842 368 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 SERPINH1P50454 418 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 CDK18Q07002 472 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 MGAT5Q09328 741 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 NAB1Q13506 487 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 GALNT3Q14435 633 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 GAB4Q2WGN9 574 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 EML3Q32P44 896 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 AASDHQ4L235 1098 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 PITRM1Q5JRX3 1037 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 ATXN7L2Q5T6C5 722 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 LGSNQ5TDP6 509 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 TRIM68Q6AZZ1 485 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 ESRP1Q6NXG1 681 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 KIAA0907Q7Z7F0 614 aaPredicted RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 METTL3Q86U44 580 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 KIAA1958Q8N8K9 716 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 ZC3H10Q96K80 434 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 TDRD1Q9BXT4 1180 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 CAPS2Q9BXY5 557 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 TRABDQ9H4I3 376 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 MRM3Q9HC36 420 aaKnown RBP9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 GTSE1Q9NYZ3 720 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 ZFATQ9P243 1243 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 SLC8A2Q9UPR5 921 aa9.55□□□□□ -0.88
PDLIM5-223ENST00000627587 HEATR9A2RTY3 570 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 GOLGA8TH3BQL2 631 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 RFPL1O75677 317 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 KRT37O76014 449 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 KRT38O76015 456 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 EPN2O95208 641 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 CYP17A1P05093 508 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 FGF1P05230 155 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 BRAFP15056 766 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 DRD1P21728 446 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 ADRA1DP25100 572 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 RHOAP61586 193 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 NSUN2Q08J23 767 aaKnown RBP eCLIP9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 DMWDQ09019 674 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 MESP2Q0VG99 397 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 TRAF2Q12933 501 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 RUNX3Q13761 415 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 BMPR2Q13873 1038 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 PTPRRQ15256 657 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 FBXO43Q4G163 708 aa9.54□□□□□ -0.88
PDLIM5-223ENST00000627587 HSP90AA5PQ58FG0 334 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms