RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 JUPP14923 745 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 COMTP21964 271 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 VIPR1P32241 457 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 DSC2Q02487 901 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 PPARDQ03181 441 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 MTM1Q13496 603 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 NFATC4Q14934 902 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 ACOX1Q15067 660 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 ALG11Q2TAA5 492 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 ARMC12Q5T9G4 340 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 LRRC38Q5VT99 294 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 ALG1LQ6GMV1 187 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 ENPP7Q6UWV6 458 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 CCNYQ8ND76 341 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 ARRDC2Q8TBH0 407 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 MDM1Q8TC05 714 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 FUBP1Q96AE4 644 aaKnown RBP18.43■□□□□ 0.54
CLN3-237ENST00000569030 SCRN2Q96FV2 425 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 LGMNQ99538 433 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 SLC13A1Q9BZW2 595 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 POLR1EQ9GZS1 481 aaKnown RBP18.43■□□□□ 0.54
CLN3-237ENST00000569030 URB1O60287 2271 aaKnown RBP18.43■□□□□ 0.54
CLN3-237ENST00000569030 ZFYVE26Q68DK2 2539 aa18.43■□□□□ 0.54
CLN3-237ENST00000569030 ZFHX4Q86UP3 3567 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 NPIPB15A6NHN6 443 aaPredicted RBP18.42■□□□□ 0.54
CLN3-237ENST00000569030 SRRM3A6NNA2 597 aaPredicted RBP18.42■□□□□ 0.54
CLN3-237ENST00000569030 YY2O15391 372 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 FZD6O60353 706 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 HEXIM1O94992 359 aaKnown RBP18.42■□□□□ 0.54
CLN3-237ENST00000569030 KRT1P04264 644 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 HLA-DQB2P05538 268 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 TSHRP16473 764 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 CTPS1P17812 591 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 MX2P20592 715 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 LHCGRP22888 699 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 SLC1A1P43005 524 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 HK3P52790 923 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 INSM1Q01101 510 aaPredicted RBP18.42■□□□□ 0.54
CLN3-237ENST00000569030 NIPAL4Q0D2K0 466 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 TCEA2Q15560 299 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 DENND2CQ68D51 928 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 SLC9A4Q6AI14 798 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 ZCCHC8Q6NZY4 707 aaKnown RBP18.42■□□□□ 0.54
CLN3-237ENST00000569030 NPNTQ6UXI9 565 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 RD3Q7Z3Z2 195 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 HSD11B1LQ7Z5J1 315 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 TSPAN33Q86UF1 283 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 HID1Q8IV36 788 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 RNF25Q96BH1 459 aaPredicted RBP18.42■□□□□ 0.54
CLN3-237ENST00000569030 HDAC11Q96DB2 347 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 MRFAP1L1Q96HT8 127 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 MCCC1Q96RQ3 725 aaPredicted RBP18.42■□□□□ 0.54
CLN3-237ENST00000569030 GOLPH3Q9H4A6 298 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 PPIL1Q9Y3C6 166 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 TTLL3Q9Y4R7 772 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 PCDHA13Q9Y5I0 950 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 HEY1Q9Y5J3 304 aa18.42■□□□□ 0.54
CLN3-237ENST00000569030 COL27A1Q8IZC6 1860 aaPredicted RBP18.41■□□□□ 0.54
CLN3-237ENST00000569030 TMEM202A6NGA9 273 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 LMO7DNF2Z398 122 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 TPP1O14773 563 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 ALPIP09923 528 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 HTR1BP28222 390 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 TRIM23P36406 574 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 NOP2P46087 812 aaKnown RBP18.41■□□□□ 0.54
CLN3-237ENST00000569030 HADHBP55084 474 aaKnown RBP18.41■□□□□ 0.54
CLN3-237ENST00000569030 SRP54P61011 504 aaKnown RBP18.41■□□□□ 0.54
CLN3-237ENST00000569030 TARDBPQ13148 414 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLN3-237ENST00000569030 PNCKQ6P2M8 343 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 VSIG1Q86XK7 387 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 RHOT1Q8IXI2 618 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 CCDC13Q8IYE1 715 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 TPCN2Q8NHX9 752 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 TBATAQ96M53 351 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 WDR92Q96MX6 357 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 IL12RB2Q99665 862 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 LGR4Q9BXB1 951 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 CCDC86Q9H6F5 360 aaKnown RBP18.41■□□□□ 0.54
CLN3-237ENST00000569030 AMACRQ9UHK6 382 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 SALL4Q9UJQ4 1053 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 ALG6Q9Y672 507 aa18.41■□□□□ 0.54
CLN3-237ENST00000569030 KCNK1O00180 336 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 APOL1O14791 398 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 PRLP01236 227 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 JCHAINP01591 159 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 CYP2A6P11509 494 aaPredicted RBP18.4■□□□□ 0.54
CLN3-237ENST00000569030 HNF1BP35680 557 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 ETV3P41162 512 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 BLKP51451 505 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 E2F1Q01094 437 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 CYP4F3Q08477 520 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 PPIDQ08752 370 aaKnown RBP18.4■□□□□ 0.54
CLN3-237ENST00000569030 CDKN3Q16667 212 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 ESRP1Q6NXG1 681 aaKnown RBP18.4■□□□□ 0.54
CLN3-237ENST00000569030 MFSD7Q6UXD7 560 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 RFLNAQ6ZTI6 216 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 PROSER1Q86XN7 944 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 CCDC170Q8IYT3 715 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 CNTD1Q8N815 330 aa18.4■□□□□ 0.54
CLN3-237ENST00000569030 PDCD7Q8N8D1 485 aaKnown RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms