RNA–Protein interactions for RNA: ENST00000566347.5

CLN6-207, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best) BASIC

Gene CLN6, Length 981 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-207ENST00000566347 TNFRSF10CO14798 259 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 CPP00450 1065 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 TRIM23P36406 574 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 SSR1P43307 286 aaKnown RBP20.23■□□□□ 0.83
CLN6-207ENST00000566347 MMP13P45452 471 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 PCBP4P57723 403 aaKnown RBP20.23■□□□□ 0.83
CLN6-207ENST00000566347 ERVPABLB-1P60509 514 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 PGBD5Q8N414 524 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 ZNF248Q8NDW4 579 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 OR6C4Q8NGE1 309 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 ZNF564Q8TBZ8 553 aaPredicted RBP20.23■□□□□ 0.83
CLN6-207ENST00000566347 FAM71BQ8TC56 605 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 PDCD6IPQ8WUM4 868 aaKnown RBP20.23■□□□□ 0.83
CLN6-207ENST00000566347 FUBP1Q96AE4 644 aaKnown RBP20.23■□□□□ 0.83
CLN6-207ENST00000566347 PDXPQ96GD0 296 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 RBM15Q96T37 977 aaKnown RBP eCLIP20.23■□□□□ 0.832e-7■■■■□ 25.8
CLN6-207ENST00000566347 CCDC3Q9BQI4 270 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 WDR26Q9H7D7 661 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 GULP1Q9UBP9 304 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 PHTF1Q9UMS5 762 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 GPR34Q9UPC5 381 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 SHROOM3Q8TF72 1996 aa20.23■□□□□ 0.83
CLN6-207ENST00000566347 COL27A1Q8IZC6 1860 aaPredicted RBP20.22■□□□□ 0.83
CLN6-207ENST00000566347 TTC24A2A3L6 582 aaPredicted RBP20.22■□□□□ 0.83
CLN6-207ENST00000566347 A8MX80 341 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 PDE2AO00408 941 aaPredicted RBP20.22■□□□□ 0.83
CLN6-207ENST00000566347 CYP2A6P11509 494 aaPredicted RBP20.22■□□□□ 0.83
CLN6-207ENST00000566347 GM2AP17900 193 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 CASP14P31944 242 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 VIPR1P32241 457 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 SOWAHCQ53LP3 525 aaPredicted RBP20.22■□□□□ 0.83
CLN6-207ENST00000566347 PNCKQ6P2M8 343 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 IGF2-ASQ6U949 168 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 CRTC1Q6UUV9 634 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 KYQ8NBH2 561 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 CRELD1Q96HD1 420 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 COQ10AQ96MF6 247 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 SIRPGQ9P1W8 387 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 LCMT1Q9UIC8 334 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 PTPRQQ9UMZ3 2332 aa20.22■□□□□ 0.83
CLN6-207ENST00000566347 TMEM202A6NGA9 273 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 IL4RP24394 825 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 HNRNPH3P31942 346 aaKnown RBP20.21■□□□□ 0.83
CLN6-207ENST00000566347 CCDC173Q0VFZ6 552 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 SPIDRQ14159 915 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 TCEA2Q15560 299 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 CNGA3Q16281 694 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 OR1E3Q8WZA6 343 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 NUS1Q96E22 293 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 ATXN7L3BQ96GX2 97 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 HIC2Q96JB3 615 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 LGMNQ99538 433 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 FGF22Q9HCT0 170 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 THSD1Q9NS62 852 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 CTTNBP2NLQ9P2B4 639 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 UVRAGQ9P2Y5 699 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 NENFQ9UMX5 172 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 ENTPD2Q9Y5L3 495 aa20.21■□□□□ 0.83
CLN6-207ENST00000566347 PSMD11O00231 422 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 HEXIM1O94992 359 aaKnown RBP20.2■□□□□ 0.82
CLN6-207ENST00000566347 KRT10P13645 584 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 MAXP61244 160 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 TRAF2Q12933 501 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 MMRN1Q13201 1228 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 DPYSL3Q14195 570 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 TSR1Q2NL82 804 aaKnown RBP20.2■□□□□ 0.82
CLN6-207ENST00000566347 ZSCAN23Q3MJ62 389 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 C3orf38Q5JPI3 329 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 ARMC12Q5T9G4 340 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 USP45Q70EL2 814 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 TEX26Q8N6G2 289 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 CTNNBL1Q8WYA6 563 aaPredicted RBP20.2■□□□□ 0.82
CLN6-207ENST00000566347 XPO4Q9C0E2 1151 aaKnown RBP20.2■□□□□ 0.82
CLN6-207ENST00000566347 PRORYQ9H606 182 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 SYNDIG1Q9H7V2 258 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 NT5MQ9NPB1 228 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 HAUS2Q9NVX0 235 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 SATB2Q9UPW6 733 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 PCDHGA8Q9Y5G5 932 aa20.2■□□□□ 0.82
CLN6-207ENST00000566347 BPTFQ12830 3046 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 NTN3O00634 580 aaPredicted RBP20.19■□□□□ 0.82
CLN6-207ENST00000566347 PROSCO94903 275 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 PGLSO95336 258 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 CD48P09326 243 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 H2AFZP0C0S5 128 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 MYCLP1P12525 358 aaPredicted RBP20.19■□□□□ 0.82
CLN6-207ENST00000566347 RBMS1P29558 406 aaKnown RBP20.19■□□□□ 0.82
CLN6-207ENST00000566347 GARSP41250 739 aaKnown RBP20.19■□□□□ 0.82
CLN6-207ENST00000566347 ARSEP51690 589 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 TLE3Q04726 772 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 GALNT2Q10471 571 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 ARHGEF7Q14155 803 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 PAFAH1B3Q15102 231 aaKnown RBP20.19■□□□□ 0.82
CLN6-207ENST00000566347 PDK2Q15119 407 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 SLC18A3Q16572 532 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 KCTD16Q68DU8 428 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 TIGD7Q6NT04 549 aaPredicted RBP20.19■□□□□ 0.82
CLN6-207ENST00000566347 NYAP1Q6ZVC0 841 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 H2AFVQ71UI9 128 aa20.19■□□□□ 0.82
CLN6-207ENST00000566347 TAF8Q7Z7C8 310 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms