RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	BMP6	P22004	513 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	LIG3	P49916	1009 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	TPM4	P67936	248 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	ILF3	Q12906	894 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	AMZ1	Q400G9	498 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	KCTD16	Q68DU8	428 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	KLHL10	Q6JEL2	608 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	GJB7	Q6PEY0	223 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	GBP6	Q6ZN66	633 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	SLC47A2	Q86VL8	602 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	NLGN4X	Q8N0W4	816 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	ENOX1	Q8TC92	643 aa	Known RBP	12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	ART4	Q93070	314 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	TBC1D31	Q96DN5	1066 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	TUBGCP5	Q96RT8	1024 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	ZPBP	Q9BS86	351 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	GSDMC	Q9BYG8	508 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	TMEM168	Q9H0V1	697 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	WDR26	Q9H7D7	661 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	ZNF71	Q9NQZ8	489 aa	Predicted RBP	12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	TMEM59L	Q9UK28	342 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	PILRA	Q9UKJ1	303 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	CTNND2	Q9UQB3	1225 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	PLAA	Q9Y263	795 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	ATP8A1	Q9Y2Q0	1164 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	DAAM1	Q9Y4D1	1078 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	ZFC3H1	O60293	1989 aa	Known RBP	12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	ANKRD36	A6QL64	1941 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	PRR19	A6NJB7	356 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	TPM3	P06753	285 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	ITIH2	P19823	946 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	CD1C	P29017	333 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	ALDH4A1	P30038	563 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	CDC25B	P30305	580 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	TRIM23	P36406	574 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	OR1D5	P58170	312 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	YBEY	P58557	167 aa	Predicted RBP	12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	GPLD1	P80108	840 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	ABHD18	Q0P651	414 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	PAK1	Q13153	545 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	BIRC2	Q13490	618 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	RAPGEF1	Q13905	1077 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	EXOC3L4	Q17RC7	722 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	NYAP1	Q6ZVC0	841 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	ZNF354C	Q86Y25	554 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	ZDHHC1	Q8WTX9	485 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	PMEPA1	Q969W9	287 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	MRFAP1L1	Q96HT8	127 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	PDCL3	Q9H2J4	239 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	TRIT1	Q9H3H1	467 aa	Known RBP	12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	SUV39H2	Q9H5I1	410 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	CYP4F12	Q9HCS2	524 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	MRPL40	Q9NQ50	206 aa	Known RBP	12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	PLCB1	Q9NQ66	1216 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	TRNAU1AP	Q9NX07	287 aa	Known RBP	12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	SLC39A1	Q9NY26	324 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	KCTD3	Q9Y597	815 aa		12.47	□□□□□ -0.41
CAPN1-223	ENST00000533079	PPP1R3G	B7ZBB8	358 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	BIN1	O00499	593 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	RECQL5	O94762	991 aa	Predicted RBP	12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	LRIG2	O94898	1065 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	PIGN	O95427	931 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	ELFN1	P0C7U0	828 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	MYCLP1	P12525	358 aa	Predicted RBP	12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	SLC9A1	P19634	815 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	ADRA1B	P35368	520 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	CLCN1	P35523	988 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	COPB1	P53618	953 aa	Known RBP	12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	MAZ	P56270	477 aa	Known RBP	12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	MYL5	Q02045	173 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	PARP15	Q460N3	678 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	TRNP1	Q6NT89	227 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	LEKR1	Q6ZMV7	388 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	STRADA	Q7RTN6	431 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	FAM129C	Q86XR2	697 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	SFTPA2	Q8IWL1	248 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	FAM71A	Q8IYT1	594 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	RTL3	Q8N8U3	475 aa	Known RBP	12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	PLA2G15	Q8NCC3	412 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	STARD8	Q92502	1023 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	TRIM44	Q96DX7	344 aa	Predicted RBP	12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	CRACR2A	Q9BSW2	395 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	KCTD5	Q9NXV2	234 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	LHX3	Q9UBR4	397 aa		12.46	□□□□□ -0.41
CAPN1-223	ENST00000533079	IGHV1OR21-1	A0A087WYE8	117 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	MKRN2OS	H3BPM6	223 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	NKX2-8	O15522	239 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	VPS4B	O75351	444 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	AGFG2	O95081	481 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	ECEL1	O95672	775 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	PRKCG	P05129	697 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	FGF1	P05230	155 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	PRKAR1A	P10644	381 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	SERPINA4	P29622	427 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	ZNF75D	P51815	510 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	ATP11A	P98196	1134 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	MAP7	Q14244	749 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	FHL5	Q5TD97	284 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	TCTN3	Q6NUS6	607 aa		12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms