RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 NDUFAF2Q8N183 169 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 CXorf40AQ8TE69 158 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 RAB7BQ96AH8 199 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 FAM131CQ96AQ9 280 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 SPACA7Q96KW9 195 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 EPC1Q9H2F5 836 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 C6orf106Q9H6K1 298 aaPredicted RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 SGK2Q9HBY8 427 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 EPB41L5Q9HCM4 733 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 CASS4Q9NQ75 786 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 GRHL1Q9NZI5 618 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 ANAPC5Q9UJX4 755 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 RPL26L1Q9UNX3 145 aaKnown RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 PPIL1Q9Y3C6 166 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 ZNF711Q9Y462 761 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 WDFY4Q6ZS81 3184 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 LRP4O75096 1905 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 C1orf232A0A0U1RR37 186 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 AURKAO14965 403 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 SLC7A4O43246 635 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 NDUFS2O75306 463 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 AVILO75366 819 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 CLDN7O95471 211 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 EPOP01588 193 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 IGLV3-19P01714 112 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 C1SP09871 688 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 ELFN1P0C7U0 828 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 MGAT1P26572 445 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 OXTRP30559 389 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 HOXA6P31267 233 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 CRADDP78560 199 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 CCDC15Q0P6D6 951 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 CALCOCO2Q13137 446 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 ARHGEF7Q14155 803 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 TMEM52BQ4KMG9 183 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 CCDC38Q502W7 563 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 GLE1Q53GS7 698 aaKnown RBP13.75□□□□□ -0.21
CD44-224ENST00000526669 SEL1L3Q68CR1 1132 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 LRRC66Q68CR7 880 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 HIBCHQ6NVY1 386 aaPredicted RBP13.75□□□□□ -0.21
CD44-224ENST00000526669 MICALCLQ6ZW33 695 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 GLT6D1Q7Z4J2 308 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 CAND1Q86VP6 1230 aaKnown RBP13.75□□□□□ -0.21
CD44-224ENST00000526669 SNX19Q92543 992 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 SCRN2Q96FV2 425 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 SERPINB12Q96P63 405 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 MCCC1Q96RQ3 725 aaPredicted RBP13.75□□□□□ -0.21
CD44-224ENST00000526669 GPR63Q9BZJ6 419 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 WHRNQ9P202 907 aa13.75□□□□□ -0.21
CD44-224ENST00000526669 ZFR2Q9UPR6 939 aaKnown RBP13.75□□□□□ -0.21
CD44-224ENST00000526669 CACNA1EQ15878 2313 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 A0A1W2PQU0 124 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 IGLON5A6NGN9 336 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 LRRC72A6NJI9 287 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 BHMG1C9JSJ3 638 aaPredicted RBP13.74□□□□□ -0.21
CD44-224ENST00000526669 MAP3K13O43283 966 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 AP1G1O43747 822 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 FSBPO95073 299 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 NFKBIAP25963 317 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 LIG3P49916 1009 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 PLTPP55058 493 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 SARNPP82979 210 aaKnown RBP13.74□□□□□ -0.21
CD44-224ENST00000526669 CDK16Q00536 496 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 RPL6Q02878 288 aaKnown RBP13.74□□□□□ -0.21
CD44-224ENST00000526669 PTPRCAPQ14761 206 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 MORF4L2Q15014 288 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 LRRC8BQ6P9F7 803 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 LIPIQ6XZB0 460 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 RFLNAQ6ZTI6 216 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 ARMCX6Q7L4S7 300 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 HOOK3Q86VS8 718 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 TTC30BQ8N4P2 665 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 MCUQ8NE86 351 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 OR2T34Q8NGX1 318 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 IFT81Q8WYA0 676 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 SPOCK2Q92563 424 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 MYOCQ99972 504 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 ARNT2Q9HBZ2 717 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 PREBQ9HCU5 417 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 BPIFA1Q9NP55 256 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 SYBUQ9NX95 663 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 KCTD3Q9Y597 815 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 ARL5AQ9Y689 179 aa13.74□□□□□ -0.21
CD44-224ENST00000526669 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 CCDC163A0A0D9SF12 145 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 TP73O15350 636 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 TSPAN6O43657 245 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 LZTS3O60299 673 aaPredicted RBP13.73□□□□□ -0.21
CD44-224ENST00000526669 RPP40O75818 363 aaKnown RBP13.73□□□□□ -0.21
CD44-224ENST00000526669 C6P13671 934 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 SUOXP51687 545 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 TMPRSS15P98073 1019 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 MSLNQ13421 630 aaPredicted RBP13.73□□□□□ -0.21
CD44-224ENST00000526669 ACOX1Q15067 660 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 CDKN3Q16667 212 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 BBS9Q3SYG4 887 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 MSS51Q4VC12 460 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 HP1BP3Q5SSJ5 553 aaPredicted RBP13.73□□□□□ -0.21
CD44-224ENST00000526669 FNBP1LQ5T0N5 605 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 ZDHHC24Q6UX98 284 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms