RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CFAP52Q8N1V2 620 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 OSBPL10Q9BXB5 764 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 ELOVL6Q9H5J4 265 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 DPP7Q9UHL4 492 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 DGKBQ9Y6T7 804 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 PHRF1Q9P1Y6 1649 aaKnown RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 LRCH4O75427 683 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 CDK4P11802 303 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ATP6V1E1P36543 226 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 PRKCZQ05513 592 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 CEP78Q5JTW2 689 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 CGB2Q6NT52 195 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 DOK6Q6PKX4 331 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 PEX5LQ8IYB4 626 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ST13P5Q8NFI4 369 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 MAF1Q9H063 256 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 CATSPERZQ9NTU4 200 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 SESN1Q9Y6P5 492 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 PAGE1O75459 146 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 CPSF4O95639 269 aaKnown RBP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 CD48P09326 243 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 STT3AP46977 705 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 COPZ1P61923 177 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 RELAQ04206 551 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 SLC10A6Q3KNW5 377 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 FNDC3BQ53EP0 1204 aaKnown RBP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 RD3Q7Z3Z2 195 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 STK32CQ86UX6 486 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 BPIFB6Q8NFQ5 453 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 LRTOMTQ8WZ04 291 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 IRGQQ8WZA9 623 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 PPP1R10Q96QC0 940 aaKnown RBP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 C8orf4Q9NR00 106 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ZNF112Q9UJU3 913 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 GNG14A0A1W2PPG7 69 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 SH3BGRLO75368 114 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 TIPRLO75663 272 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ITGAXP20702 1163 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 IST1P53990 364 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 PTP4A2Q12974 167 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 PABPC1LQ4VXU2 614 aaKnown RBP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ERAP2Q6P179 960 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 P2RY11Q96G91 374 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 CAPNS2Q96L46 248 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 EBF4Q9BQW3 602 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 NOCTQ9UK39 431 aaKnown RBP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 MOXD2PA6NHM9 499 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 HDAC3O15379 428 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 DENRO43583 198 aaKnown RBP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 FGFR1P11362 822 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 SLC2A4P14672 509 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 IDH3AP50213 366 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 SMAD3P84022 425 aaKnown RBP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ATP6AP1LQ52LC2 224 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 SPATA6LQ8N4H0 392 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 TMEM199Q8N511 208 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 SNX27Q96L92 541 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ALG9Q9H6U8 611 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 TRMT13Q9NUP7 481 aaKnown RBP13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ZMYM5Q9UJ78 669 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ANAPC2Q9UJX6 822 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 ADAMTS6Q9UKP5 1117 aa13.17□□□□□ -0.3
TCOF1-213ENST00000514442 J3QRK9 145 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 CSH1P0DML2 217 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 CSH2P0DML3 217 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 AOC1P19801 751 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 LMO2P25791 158 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 GSSP48637 474 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 GALNT3Q14435 633 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 CARTPTQ16568 116 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 PAGE2BQ5JRK9 111 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 BNIPLQ7Z465 357 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 LUZP2Q86TE4 346 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 FBXL8Q96CD0 374 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 DYRK1BQ9Y463 629 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 HNRNPCL2B2RXH8 293 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 KLF11O14901 512 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 VNN1O95497 513 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 GBE1Q04446 702 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 EPS8Q12929 822 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 TLR1Q15399 786 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 ZFP69Q49AA0 526 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 METTL21CQ5VZV1 264 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 TTC23Q5W5X9 447 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 UBR7Q8N806 425 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 RAB2BQ8WUD1 216 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 PROX1Q92786 737 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 RNF145Q96MT1 663 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 EPB41L1Q9H4G0 881 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 FANCEQ9HB96 536 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 TMPRSS4Q9NRS4 437 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 FAM155BO75949 473 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 LSM3P62310 102 aaKnown RBP13.16□□□□□ -0.3
TCOF1-213ENST00000514442 PHC1P78364 1004 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 CDK18Q07002 472 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 TAF10Q12962 218 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 SQLEQ14534 574 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 FAM98BQ52LJ0 330 aaKnown RBP13.16□□□□□ -0.3
TCOF1-213ENST00000514442 CPNE8Q86YQ8 564 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms