RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 KLHL10Q6JEL2 608 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 GBP6Q6ZN66 633 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 BMPERQ8N8U9 685 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 TBC1D31Q96DN5 1066 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 TIGD1Q96MW7 591 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 NCAPGQ9BPX3 1015 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 ZPBPQ9BS86 351 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 GSDMCQ9BYG8 508 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 SUV39H2Q9H5I1 410 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 WDR26Q9H7D7 661 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 PLCB1Q9NQ66 1216 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 SPATS2LQ9NUQ6 558 aaKnown RBP14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 KCNK4Q9NYG8 393 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 PDP2Q9P2J9 529 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 LHX3Q9UBR4 397 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 KCTD3Q9Y597 815 aa14.29□□□□□ -0.12
PRPF40A-211ENST00000493468 ANKRD17O75179 2603 aaKnown RBP14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 IGHV1OR21-1A0A087WYE8 117 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 RECQL5O94762 991 aaPredicted RBP14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 AGFG2O95081 481 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 PRKAR1AP10644 381 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 BMP6P22004 513 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 CSF2RBP32927 897 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 MAN1A1P33908 653 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 BPIFB4P59827 614 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 ILF3Q12906 894 aaKnown RBP eCLIP14.28□□□□□ -0.126e-10■■■■■ 32.4
PRPF40A-211ENST00000493468 PEX6Q13608 980 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 RAPGEF1Q13905 1077 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 TCTN3Q6NUS6 607 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 NRROSQ86YC3 692 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 MSANTD4Q8NCY6 345 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 RTP4Q96DX8 246 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 TUBGCP5Q96RT8 1024 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 TRIT1Q9H3H1 467 aaKnown RBP14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 NOL6Q9H6R4 1146 aaKnown RBP14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 TRNAU1APQ9NX07 287 aaKnown RBP14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 OCIAD1Q9NX40 245 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 TAAR2Q9P1P5 351 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 MAN1B1Q9UKM7 699 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 CTNND2Q9UQB3 1225 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 TP53TG5Q9Y2B4 290 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 ABCA12Q86UK0 2595 aa14.28□□□□□ -0.12
PRPF40A-211ENST00000493468 ZNF106Q9H2Y7 1883 aaKnown RBP14.27□□□□□ -0.12
PRPF40A-211ENST00000493468 LOC101059948A0A1B0GTJ6 334 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 FAM72CH0Y354 149 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 ECEL1O95672 775 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 FGFR1OPO95684 399 aaKnown RBP14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 LSM8O95777 96 aaKnown RBP14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 KRT7P08729 469 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 MYCLP1P12525 358 aaPredicted RBP14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 YBEYP58557 167 aaPredicted RBP14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 GPLD1P80108 840 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 APBA1Q02410 837 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 RALGDSQ12967 914 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 EXOC3L4Q17RC7 722 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 DEFB109BQ30KR1 87 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 CFAP58Q5T655 872 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 FHL5Q5TD97 284 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 FAM72AQ5TYM5 149 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 ANKS6Q68DC2 871 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 CAPRIN2Q6IMN6 1127 aaKnown RBP14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 FAM72DQ6L9T8 149 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 TMEM71Q6P5X7 295 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 FAM72BQ86X60 149 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 ZSWIM9Q86XI8 627 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 FAM129CQ86XR2 697 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 ELOA2Q8IYF1 753 aaPredicted RBP14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 FAM71AQ8IYT1 594 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 RTL3Q8N8U3 475 aaKnown RBP14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 GALNT11Q8NCW6 608 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 STARD8Q92502 1023 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 LGR4Q9BXB1 951 aa14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 TMEM184BQ9Y519 407 aaPredicted RBP14.27□□□□□ -0.13
PRPF40A-211ENST00000493468 ESPL1Q14674 2120 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 EFCAB7A8K855 629 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 GOLGA8SH3BPF8 625 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 FOXN3O00409 490 aaPredicted RBP14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 PLEKP08567 350 aaPredicted RBP14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 ELFN1P0C7U0 828 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 GM2AP17900 193 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 TCN2P20062 427 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 PON1P27169 355 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 MLLT10P55197 1068 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 ATP11AP98196 1134 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 MC2RQ01718 297 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 PAK1Q13153 545 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 BIRC2Q13490 618 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 MAP7Q14244 749 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 PARP15Q460N3 678 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 AFMIDQ63HM1 303 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 ISM2Q6H9L7 571 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 PNCKQ6P2M8 343 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 CEACAM20Q6UY09 585 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 LIPIQ6XZB0 460 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 ZNF354CQ86Y25 554 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 NRSN1Q8IZ57 195 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 NAGSQ8N159 534 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 TEX19Q8NA77 164 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 SSC4DQ8WTU2 575 aa14.26□□□□□ -0.13
PRPF40A-211ENST00000493468 EXOC2Q96KP1 924 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms