RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 NUDT14O95848 222 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 KLRC2P26717 231 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 PABPC1LQ4VXU2 614 aaKnown RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 ANKRD22Q5VYY1 191 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 DOK6Q6PKX4 331 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 APTXQ7Z2E3 356 aaKnown RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 DSELQ8IZU8 1212 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 ZNF557Q8N988 423 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 ITCHQ96J02 903 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 DENND2DQ9H6A0 471 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 CAPN8A6NHC0 703 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 TIPRLO75663 272 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 NELFEP18615 380 aaKnown RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 MSX2P35548 267 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 DGKZQ13574 1117 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 PPP1R15BQ5SWA1 713 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 TMEM63BQ5T3F8 832 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 MZT2BQ6NZ67 158 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 KIAA0408Q6ZU52 694 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 OMA1Q96E52 524 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 SLITRK2Q9H156 845 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 C12orf65Q9H3J6 166 aaKnown RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 GRHL1Q9NZI5 618 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 MFSD11O43934 449 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 STX11O75558 287 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 ZSWIM7Q19AV6 140 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 SPATA19Q7Z5L4 167 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 DENND1CQ8IV53 801 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 FCRL2Q96LA5 508 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 ATP13A3Q9H7F0 1226 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 C8orf4Q9NR00 106 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 ABCB10Q9NRK6 738 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 RAB26Q9ULW5 256 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 ITGAXP20702 1163 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 RPL3P39023 403 aaKnown RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 PTSQ03393 145 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 BTG3Q14201 252 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 DSG4Q86SJ6 1040 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 HIPK1Q86Z02 1210 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 SDCBP2Q9H190 292 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 CCNB1IP1Q9NPC3 277 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 PCDH12Q9NPG4 1184 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 NOCTQ9UK39 431 aaKnown RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 ITGB1BP2Q9UKP3 347 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 DBTP11182 482 aaKnown RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 CRYBB1P53674 252 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 GNA13Q14344 377 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 ZNF846Q147U1 533 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 METTL21CQ5VZV1 264 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 VPS4AQ9UN37 437 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 POLR1DQ9Y2S0 133 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 SAMHD1Q9Y3Z3 626 aaKnown RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 MGRN1O60291 552 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 CST3P01034 146 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-210ENST00000487017 POC5Q8NA72 575 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 NDOR1Q9UHB4 597 aa16.48■□□□□ 0.23
COL7A1-210ENST00000487017 KIF1AQ12756 1690 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 IPO13O94829 963 aaKnown RBP16.47■□□□□ 0.23
COL7A1-210ENST00000487017 CES1P23141 567 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 ADRA1BP35368 520 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 GBE1Q04446 702 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 PIGWQ7Z7B1 504 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 SAPCD2Q86UD0 394 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 CAMKK1Q8N5S9 505 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 PSMA8Q8TAA3 256 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 LPPQ93052 612 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 OR52E6Q96RD3 313 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 POLR3HQ9Y535 204 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-210ENST00000487017 RIMBP3CA6NJZ7 1639 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 RIMBP3BA6NNM3 1639 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 RIMBP3Q9UFD9 1639 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 G3V2T6 193 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 TIGD2Q4W5G0 525 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 RSPH9Q9H1X1 276 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-210ENST00000487017 IRF6O14896 467 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 CHRNB2P17787 502 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 PRDX6P30041 224 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 PPP1R13LQ8WUF5 828 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 PANX1Q96RD7 426 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 PAGE1O75459 146 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 PFKPQ01813 784 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 RNF220Q5VTB9 566 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 PGAM4Q8N0Y7 254 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 AGO1Q9UL18 857 aaKnown RBP16.47■□□□□ 0.23
COL7A1-210ENST00000487017 MRC1P22897 1456 aa16.47■□□□□ 0.23
COL7A1-210ENST00000487017 CBFA2T3O75081 653 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 HOXB6P17509 224 aaKnown RBP16.46■□□□□ 0.23
COL7A1-210ENST00000487017 CXCR2P25025 360 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 MC4RP32245 332 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 SPIDRQ14159 915 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 HECTD2Q5U5R9 776 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 ZYG11AQ6WRX3 759 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 RHOBTB2Q9BYZ6 727 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 ATXN10Q9UBB4 475 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 ERGIC3Q9Y282 383 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 GIT1Q9Y2X7 761 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 RFXANKO14593 260 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 TBL1XO60907 577 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 UMPSP11172 480 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 EPORP19235 508 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms