RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SMPD3Q9NY59 655 aaPredicted RBP4.22□□□□□ -1.73
VPS41-212ENST00000482217 TMOD3Q9NYL9 352 aa4.22□□□□□ -1.73
VPS41-212ENST00000482217 IL1RAPL1Q9NZN1 696 aa4.22□□□□□ -1.73
VPS41-212ENST00000482217 DKK2Q9UBU2 259 aa4.22□□□□□ -1.73
VPS41-212ENST00000482217 IPO11Q9UI26 975 aaKnown RBP4.22□□□□□ -1.73
VPS41-212ENST00000482217 INTS6Q9UL03 887 aaKnown RBP4.22□□□□□ -1.73
VPS41-212ENST00000482217 R3HDM2Q9Y2K5 976 aaKnown RBP4.22□□□□□ -1.73
VPS41-212ENST00000482217 MYO3BQ8WXR4 1341 aa4.21□□□□□ -1.73
VPS41-212ENST00000482217 LOC102723971A0A1B0GUV8 181 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 SERTM2A0A1B0GWG4 89 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ARHGEF37A1IGU5 675 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 DENND3A2RUS2 1198 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 FAM90A18PA6NE21 464 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 FAM90A16PA6NEW6 464 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 FAM90A20PA6NIJ5 464 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ACOD1A6NK06 481 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 FAM90A9PA6NNJ1 464 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 FAM90A5PA8MXJ8 464 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 E2F3O00716 465 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 WDR46O15213 610 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 SPRY1O43609 319 aaPredicted RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 TRIAP1O43715 76 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PPP6R2O75170 966 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 TADA2AO75478 443 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 RASSF9O75901 435 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 NDUFA10O95299 355 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 TGFAP01135 160 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 VIMP08670 466 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 FAM90A15PP0C7V4 464 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 FAM90A14PP0C7W9 464 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 EGR1P18146 543 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 NR4A1P22736 598 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 GLRA2P23416 452 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 NR2F2P24468 414 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 CHMLP26374 656 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 IL1R2P27930 398 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PPIFP30405 207 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 PTGS2P35354 604 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 MDH1P40925 334 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 ABCG1P45844 678 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 NRIP1P48552 1158 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PXNP49023 591 aaPredicted RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 NDUFV1P49821 464 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ZNF134P52741 427 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PDE1AP54750 535 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PRRX1P54821 245 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 POLE2P56282 527 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 EIF3EP60228 445 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 PRAMEP78395 509 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 MC2RQ01718 297 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 GCNT1Q02742 428 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 FOXE3Q13461 319 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 KCNC3Q14003 757 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 HNRNPDQ14103 355 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 SQLEQ14534 574 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 SLC29A2Q14542 456 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 LRIT3Q3SXY7 679 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ANKRD20A4Q4UJ75 823 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PLA1AQ53H76 456 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ANKRD20A8PQ5CZ79 823 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ZNF484Q5JVG2 852 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ANKRD20A2Q5SQ80 823 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 UBAP2Q5T6F2 1119 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 TTC22Q5TAA0 569 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ANKRD20A1Q5TYW2 823 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ANKRD20A3Q5VUR7 823 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 AAGABQ6PD74 315 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 KLHL35Q6PF15 583 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PAPD4Q6PIY7 484 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 MFSD7Q6UXD7 560 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 CLEC17AQ6ZS10 378 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 CHST9Q7L1S5 443 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 LRRC8DQ7L1W4 858 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 CCDC83Q8IWF9 413 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PHC2Q8IXK0 858 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ELMOD2Q8IZ81 293 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ADGRG5Q8IZF4 528 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ADGRF2Q8IZF7 708 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 SYNE4Q8N205 404 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 RASGEF1CQ8N431 466 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 KCNH5Q8NCM2 988 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 OR52E1Q8NGJ3 308 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 OR8K3Q8NH51 312 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 HUS1BQ8NHY5 278 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ZNF384Q8TF68 577 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 DUSP19Q8WTR2 217 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 HDAC7Q8WUI4 952 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PRPF31Q8WWY3 499 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 IP6K1Q92551 441 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PEX13Q92968 403 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 NCLNQ969V3 563 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 LRRC45Q96CN5 670 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 SNX27Q96L92 541 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 WDFY2Q96P53 400 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 PLEKHG4BQ96PX9 1271 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 NUDCD1Q96RS6 583 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 INTS14Q96SY0 518 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 ADAM2Q99965 735 aa4.21□□□□□ -1.74
VPS41-212ENST00000482217 LLPHQ9BRT6 129 aaKnown RBP4.21□□□□□ -1.74
VPS41-212ENST00000482217 THUMPD2Q9BTF0 503 aaKnown RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms