RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 SPON2Q9BUD6 331 aa9.84□□□□□ -0.83
USP39-214ENST00000474572 DENND2DQ9H6A0 471 aaPredicted RBP9.84□□□□□ -0.83
USP39-214ENST00000474572 C11orf49Q9H6J7 331 aa9.84□□□□□ -0.83
USP39-214ENST00000474572 RNPEPL1Q9HAU8 725 aa9.84□□□□□ -0.83
USP39-214ENST00000474572 SCUBE2Q9NQ36 999 aa9.84□□□□□ -0.83
USP39-214ENST00000474572 MRPL17Q9NRX2 175 aaKnown RBP9.84□□□□□ -0.83
USP39-214ENST00000474572 SSX2IPQ9Y2D8 614 aa9.84□□□□□ -0.83
USP39-214ENST00000474572 SPO11Q9Y5K1 396 aa9.84□□□□□ -0.83
USP39-214ENST00000474572 ARL5AQ9Y689 179 aa9.84□□□□□ -0.83
USP39-214ENST00000474572 MTCL1Q9Y4B5 1905 aaKnown RBP9.84□□□□□ -0.83
USP39-214ENST00000474572 PCNTO95613 3336 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.83□□□□□ -0.84
USP39-214ENST00000474572 TRIM43BA6NCK2 446 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 A8MT66 165 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 B2RBV5 119 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 PRRG1O14668 218 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 TSPAN3O60637 253 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 TBL1XO60907 577 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 TM7SF2O76062 418 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 TMCC1O94876 653 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 C1RP00736 705 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 LMNAP02545 664 aaKnown RBP9.83□□□□□ -0.84
USP39-214ENST00000474572 CSF2RAP15509 400 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 GNAZP19086 355 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 SP100P23497 879 aaPredicted RBP9.83□□□□□ -0.84
USP39-214ENST00000474572 HTRA4P83105 476 aaPredicted RBP9.83□□□□□ -0.84
USP39-214ENST00000474572 SMAD3P84022 425 aaKnown RBP9.83□□□□□ -0.84
USP39-214ENST00000474572 SATB1Q01826 763 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 BTKQ06187 659 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 TRAF2Q12933 501 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 CSHL1Q14406 222 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 NAA25Q14CX7 972 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 TAF12Q16514 161 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 FSCBQ5H9T9 825 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 SH2D4BQ5SQS7 431 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 VWA5B1Q5TIE3 1220 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 SEL1L3Q68CR1 1132 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 HTR3DQ70Z44 454 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 TMCO2Q7Z6W1 182 aaPredicted RBP9.83□□□□□ -0.84
USP39-214ENST00000474572 SLC22A9Q8IVM8 553 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 KIRREL3Q8IZU9 778 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 CPSF7Q8N684 471 aaKnown RBP9.83□□□□□ -0.84
USP39-214ENST00000474572 ZNF784Q8NCA9 323 aaPredicted RBP9.83□□□□□ -0.84
USP39-214ENST00000474572 MDGA1Q8NFP4 955 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 OR6P1Q8NGX9 317 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 ANKRD49Q8WVL7 239 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 TRIM43Q96BQ3 446 aaPredicted RBP9.83□□□□□ -0.84
USP39-214ENST00000474572 L3HYPDHQ96EM0 354 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 SLC22A12Q96S37 553 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 TCF12Q99081 682 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 POMKQ9H5K3 350 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 GPAMQ9HCL2 828 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 CATSPERZQ9NTU4 200 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP39-214ENST00000474572 NCKIPSDQ9NZQ3 722 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 HACD3Q9P035 362 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 ZDHHC2Q9UIJ5 367 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 CPQQ9Y646 472 aa9.83□□□□□ -0.84
USP39-214ENST00000474572 CCDC189A1A4V9 331 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 F8W8V4 182 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 CBX4O00257 560 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 CCL22O00626 93 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 ZBTB14O43829 449 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 SNAP91O60641 907 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 DIAPH2O60879 1101 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 IPO13O94829 963 aaKnown RBP9.82□□□□□ -0.84
USP39-214ENST00000474572 PDHA1P08559 390 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 CCDC166P0CW27 439 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 TPBGLP0DKB5 382 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 CD1DP15813 335 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 ZNF37AP17032 561 aaPredicted RBP9.82□□□□□ -0.84
USP39-214ENST00000474572 TFEBP19484 476 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 MZF1P28698 734 aaPredicted RBP9.82□□□□□ -0.84
USP39-214ENST00000474572 CDC25CP30307 473 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 GCKP35557 465 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 CCR10P46092 362 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 CPA2P48052 419 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 CSNK1DP48730 415 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 SCNN1BP51168 640 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 KLF10Q13118 480 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 PTPRCAPQ14761 206 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 SETMARQ53H47 684 aaPredicted RBP9.82□□□□□ -0.84
USP39-214ENST00000474572 MPP7Q5T2T1 576 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 KLC3Q6P597 504 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 TRIM67Q6ZTA4 783 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 C16orf59Q7L2K0 433 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 GLT6D1Q7Z4J2 308 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 ISCA2Q86U28 154 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 LDB1Q86U70 411 aaPredicted RBP9.82□□□□□ -0.84
USP39-214ENST00000474572 ARL14EPQ8N8R7 260 aaPredicted RBP9.82□□□□□ -0.84
USP39-214ENST00000474572 FBXO27Q8NI29 283 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 RHEBL1Q8TAI7 183 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 AUTS2Q8WXX7 1259 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 LPGAT1Q92604 370 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 MCUR1Q96AQ8 359 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 OR52B2Q96RD2 323 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 TRMOQ9BU70 441 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 MUC3BQ9H195 1237 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 GSTO2Q9H4Y5 243 aa9.82□□□□□ -0.84
USP39-214ENST00000474572 SUDS3Q9H7L9 328 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms