RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 COL4A4P53420 1690 aaPredicted RBP1.84□□□□□ -2.11
CCDC39-203ENST00000473854 UBR1Q8IWV7 1749 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 A0A1W2PPC4 97 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 POM121BA6NF01 834 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 SLC38A8A6NNN8 435 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 E9PQ18 207 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 STRNO43815 780 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 NDST3O95803 873 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 KRTAP1-4P0C5Y4 121 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 PRSS56P0CW18 603 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 HARSP12081 509 aaKnown RBP1.84□□□□□ -2.11
CCDC39-203ENST00000473854 GNB3P16520 340 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ZNF26P17031 533 aaPredicted RBP1.84□□□□□ -2.11
CCDC39-203ENST00000473854 MMP14P50281 582 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 BRWD1-AS2P59051 145 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ZNF543Q08ER8 600 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 GRM4Q14833 912 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 NFE2Q16621 373 aaPredicted RBP1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ODR4Q5SWX8 454 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 MTFR2Q6P444 385 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ATF7IPQ6VMQ6 1270 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ZNF852Q6ZMS4 543 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 RINLQ6ZS11 566 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 KCTD8Q6ZWB6 473 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 GALNT7Q86SF2 657 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 HERC6Q8IVU3 1022 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 VPS52Q8N1B4 723 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 LINC00612Q8N6U2 182 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ATOH1Q92858 354 aaPredicted RBP1.84□□□□□ -2.11
CCDC39-203ENST00000473854 RNF183Q96D59 192 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 SCRN2Q96FV2 425 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ZNF354BQ96LW1 612 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 FOXN4Q96NZ1 517 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ZNF300Q96RE9 604 aaPredicted RBP1.84□□□□□ -2.11
CCDC39-203ENST00000473854 FGF22Q9HCT0 170 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 NOX4Q9NPH5 578 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 NECTIN3Q9NQS3 549 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 LIN7CQ9NUP9 197 aaKnown RBP1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ANKRD10Q9NXR5 420 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 BARHL2Q9NY43 387 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 C2CD2Q9Y426 696 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 DAAM1Q9Y4D1 1078 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 CSAG2Q9Y5P2 127 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 NEXMIFQ5QGS0 1516 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 ASXL1Q8IXJ9 1541 aa1.84□□□□□ -2.11
CCDC39-203ENST00000473854 RGPD8O14715 1765 aaPredicted RBP1.84□□□□□ -2.12
CCDC39-203ENST00000473854 AKAP12Q02952 1782 aa1.84□□□□□ -2.12
CCDC39-203ENST00000473854 TMEM131LA2VDJ0 1609 aa1.84□□□□□ -2.12
CCDC39-203ENST00000473854 MUC19Q7Z5P9 8384 aa1.84□□□□□ -2.12
CCDC39-203ENST00000473854 ANKRD30AQ9BXX3 1397 aa1.84□□□□□ -2.12
CCDC39-203ENST00000473854 SHPRHQ149N8 1683 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 UHRF1BP1Q6BDS2 1440 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 SPATA31E1Q6ZUB1 1445 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 ITSN1Q15811 1721 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 FMN2Q9NZ56 1722 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 ZNF518AQ6AHZ1 1483 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 NEO1Q92859 1461 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 PCDH17O14917 1159 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 KPNA5O15131 536 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 PQBP1O60828 265 aaKnown RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 CDC25CP30307 473 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 CEACAM8P31997 349 aaPredicted RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 STX2P32856 288 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 GNL1P36915 607 aaPredicted RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 PTGER3P43115 390 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 EEF1A1P68104 462 aaKnown RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 CDK18Q07002 472 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 SF3A3Q12874 501 aaKnown RBP eCLIP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 KCNC3Q14003 757 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 GBX1Q14549 363 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 TCTEX1D4Q5JR98 221 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 KCNT1Q5JUK3 1230 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 EEF1A1P5Q5VTE0 462 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 RINT1Q6NUQ1 792 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 ZNF790Q6PG37 636 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 FBXO38Q6PIJ6 1188 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 RNF144BQ7Z419 303 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 LRRTM1Q86UE6 522 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 STPG4Q8N801 248 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 SCAIQ8N9R8 606 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 GLIS1Q8NBF1 620 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 OR4N2Q8NGD1 307 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 OTUD7AQ8TE49 926 aaPredicted RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 PCDH9Q9HC56 1237 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 SLC52A3Q9NQ40 469 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 SLC22A11Q9NSA0 550 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 MCM9Q9NXL9 1143 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 DLGAP2Q9P1A6 1054 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 CFDP1Q9UEE9 299 aaPredicted RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 RALYQ9UKM9 306 aaKnown RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 MAN2B2Q9Y2E5 1009 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 USP32Q8NFA0 1604 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 DLG5Q8TDM6 1919 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 ZNF142P52746 1687 aaPredicted RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 RIMS1Q86UR5 1692 aaKnown RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 TOPAZ1Q8N9V7 1692 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 TONSLQ96HA7 1378 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 MON2Q7Z3U7 1717 aa1.83□□□□□ -2.12
CCDC39-203ENST00000473854 MARF1Q9Y4F3 1742 aaKnown RBP1.83□□□□□ -2.12
CCDC39-203ENST00000473854 RTEL1-TNFRSF6BF6WH68 1400 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms