RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 KCNA7Q96RP8 456 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 SEPT5Q99719 369 aaPredicted RBP11.9□□□□□ -0.5
MSH6-204ENST00000445503 TRIM62Q9BVG3 475 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 KIFC1Q9BW19 673 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 SOX17Q9H6I2 414 aaPredicted RBP11.9□□□□□ -0.5
MSH6-204ENST00000445503 NDFIP2Q9NV92 336 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 GDAP2Q9NXN4 497 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 SLC12A8A0AV02 714 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 PFDN6O15212 129 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 NPHS1O60500 1241 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 SNAI1O95863 264 aaPredicted RBP11.9□□□□□ -0.5
MSH6-204ENST00000445503 LDLRP01130 860 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 NR4A1P22736 598 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 HK2P52789 917 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 NUP107P57740 925 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 RHDQ02161 417 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 CHST15Q7LFX5 561 aaPredicted RBP11.9□□□□□ -0.5
MSH6-204ENST00000445503 SPPL2BQ8TCT7 592 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 GRIN3AQ8TCU5 1115 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 PAAF1Q9BRP4 392 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 MRGBPQ9NV56 204 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.9□□□□□ -0.5
MSH6-204ENST00000445503 USP3Q9Y6I4 520 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 TRIP11Q15643 1979 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 C1orf232A0A0U1RR37 186 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 MATN3O15232 486 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 SYNCRIPO60506 623 aaKnown RBP11.9□□□□□ -0.5
MSH6-204ENST00000445503 CCNCP24863 283 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 ADSLP30566 484 aaPredicted RBP11.9□□□□□ -0.5
MSH6-204ENST00000445503 OR1E1P30953 314 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 DPP6P42658 865 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 TBX4P57082 545 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 TIGD5Q53EQ6 642 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 ANKS6Q68DC2 871 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 EGFL6Q8IUX8 553 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 LZTR1Q8N653 840 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 FAM124BQ9H5Z6 455 aaPredicted RBP11.9□□□□□ -0.5
MSH6-204ENST00000445503 AKTIPQ9H8T0 292 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 FAM105AQ9NUU6 356 aa11.9□□□□□ -0.5
MSH6-204ENST00000445503 AFF4Q9UHB7 1163 aaKnown RBP11.9□□□□□ -0.5
MSH6-204ENST00000445503 SMIM35A0A1B0GVV1 85 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 SCAMP3O14828 347 aaKnown RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 DENRO43583 198 aaKnown RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 MARCH8Q5T0T0 291 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 CXCL17Q6UXB2 119 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 TWIST2Q8WVJ9 160 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 OLFM1Q99784 485 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 MTG1Q9BT17 334 aaPredicted RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 ADAMTS10Q9H324 1103 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 DOLKQ9UPQ8 538 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 CCDC154A6NI56 674 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 HMOX2P30519 316 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 TMEM86AQ8N2M4 240 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 CDYL2Q8N8U2 506 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 FIG4Q92562 907 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 TBCDQ9BTW9 1192 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 C9orf16Q9BUW7 83 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 APOL5Q9BWW9 433 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 MAF1Q9H063 256 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 AGO3Q9H9G7 860 aaKnown RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 WDR6Q9NNW5 1121 aaKnown RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 RIMS3Q9UJD0 308 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 FADS3Q9Y5Q0 445 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 SNX5Q9Y5X3 404 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 RAD54BQ9Y620 910 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 DNAJC25-GNG10A0A024R161 153 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 SYCE1LA8MT33 242 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 PTGES3LE9PB15 166 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 J3KR12 359 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 RAMP2O60895 175 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 ALOX15P16050 662 aaPredicted RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 SLC7A1P30825 629 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 RAD51Q06609 339 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 POLD3Q15054 466 aaPredicted RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 PSMD5Q16401 504 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 IMPG1Q17R60 797 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 SLC44A4Q53GD3 710 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 IFNLR1Q8IU57 520 aaPredicted RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 NAT16Q8N8M0 369 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 MAML3Q96JK9 1138 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 FCRL5Q96RD9 977 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 ZBTB18Q99592 522 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 BEGAINQ9BUH8 593 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 ABCC13Q9NSE7 274 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 CHCHD3Q9NX63 227 aaKnown RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 A0A1W2PQH9 124 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 E9PAM4 449 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 SOAT2O75908 522 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 CPT1AP50416 773 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 CRYBB1P53674 252 aaPredicted RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 AIF1P55008 147 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 SLC10A7Q0GE19 358 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 HERC3Q15034 1050 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 INTS6LQ5JSJ4 861 aaKnown RBP11.89□□□□□ -0.51
MSH6-204ENST00000445503 TSTD2Q5T7W7 516 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 CHSY3Q70JA7 882 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 LSMEM2Q8N112 164 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 ERLEC1Q96DZ1 483 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 NSMCE2Q96MF7 247 aa11.89□□□□□ -0.51
MSH6-204ENST00000445503 SLC2A13Q96QE2 648 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms