RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TMLHEQ9NVH6 421 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 LMCD1Q9NZU5 365 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 GIMAP2Q9UG22 337 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 PTGDR2Q9Y5Y4 395 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 SAC3D1A6NKF1 404 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 NME4O00746 187 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 IRAK2O43187 625 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 WISP3O95389 354 aaPredicted RBP12.74□□□□□ -0.37
SHMT1-205ENST00000395684 CYP2C18P33260 490 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 CLCN5P51795 746 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 SH3BP2P78314 561 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 DCTN2Q13561 401 aaKnown RBP12.74□□□□□ -0.37
SHMT1-205ENST00000395684 IHHQ14623 411 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 TIGD5Q53EQ6 642 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 UNC50Q53HI1 259 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 PIM3Q86V86 326 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 CILP2Q8IUL8 1156 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 SLC22A9Q8IVM8 553 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 LPPQ93052 612 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 DNAJC15Q9Y5T4 150 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 SQORQ9Y6N5 450 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 ZNF236Q9UL36 1845 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 TRIP12Q14669 1992 aaPredicted RBP12.74□□□□□ -0.37
SHMT1-205ENST00000395684 A0A0J9YYE9 177 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 FAM149AA5PLN7 773 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 CASTOR2A6NHX0 329 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 C9JVG2 144 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 GALK1P51570 392 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 TUBA4AP68366 448 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 GRB14Q14449 540 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 C14orf80Q86SX3 495 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 SPPL2CQ8IUH8 684 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 EPHX4Q8IUS5 362 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 CBR4Q8N4T8 237 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 LZTR1Q8N653 840 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 DIS3LQ8TF46 1054 aaKnown RBP12.74□□□□□ -0.37
SHMT1-205ENST00000395684 TCF12Q99081 682 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 CATSPERBQ9H7T0 1116 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 ARNT2Q9HBZ2 717 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 CCM2LQ9NUG4 571 aaPredicted RBP12.74□□□□□ -0.37
SHMT1-205ENST00000395684 NUDT5Q9UKK9 219 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 SLC8A2Q9UPR5 921 aa12.74□□□□□ -0.37
SHMT1-205ENST00000395684 OR51F1A6NGY5 319 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 FGF10O15520 208 aaPredicted RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 THP07101 528 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 HSPA8P11142 646 aaKnown RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 ATP4BP51164 291 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 ARSDP51689 593 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 ADARP55265 1226 aaKnown RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 MAXP61244 160 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 PLOD1Q02809 727 aaPredicted RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 VPS26BQ4G0F5 336 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 AFMIDQ63HM1 303 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 HM13Q8TCT9 377 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 CALML6Q8TD86 181 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 PTERQ96BW5 349 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 ROPN1LQ96C74 230 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 L3HYPDHQ96EM0 354 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 TRMOQ9BU70 441 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 UPF3AQ9H1J1 476 aaKnown RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 TBC1D13Q9NVG8 400 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 SMOXQ9NWM0 555 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 MARCH4Q9P2E8 410 aaPredicted RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 CIDEBQ9UHD4 219 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 EGFL7Q9UHF1 273 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 AURKCQ9UQB9 309 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 TTC24A2A3L6 582 aaPredicted RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 PFDN1O60925 122 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 PEX11BO96011 259 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 PSEN2P49810 448 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 SERPINH1P50454 418 aaKnown RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 FOXA1P55317 472 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 CTBSQ01459 385 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 PAN2Q504Q3 1202 aaKnown RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 IRAK1BP1Q5VVH5 260 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 TIGD7Q6NT04 549 aaPredicted RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 LRRTM3Q86VH5 581 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 SLC15A3Q8IY34 581 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 OR52K2Q8NGK3 314 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 GTF3C2Q8WUA4 911 aaPredicted RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 CASP10Q92851 521 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 TSPAN17Q96FV3 270 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 TMEM209Q96SK2 561 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 ATP13A1Q9HD20 1204 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 SLC38A7Q9NVC3 462 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 POLR3BQ9NW08 1133 aaPredicted RBP12.73□□□□□ -0.37
SHMT1-205ENST00000395684 ABCD2Q9UBJ2 740 aa12.73□□□□□ -0.37
SHMT1-205ENST00000395684 LRRC14BA6NHZ5 514 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 NR5A2O00482 541 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 SIX3O95343 332 aaPredicted RBP12.72□□□□□ -0.37
SHMT1-205ENST00000395684 BMP10O95393 424 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 S1PR4O95977 384 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 MOCS2O96007 188 aaPredicted RBP12.72□□□□□ -0.37
SHMT1-205ENST00000395684 CHRM3P20309 590 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 CAPN3P20807 821 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 PCSK1P29120 753 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 STX1BP61266 288 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 GRB7Q14451 532 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 LPIN1Q14693 890 aa12.72□□□□□ -0.37
SHMT1-205ENST00000395684 KIF19Q2TAC6 998 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms