RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 COMTP21964 271 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 VIPR1P32241 457 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 DSC2Q02487 901 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 PPARDQ03181 441 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 MTM1Q13496 603 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 NFATC4Q14934 902 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 ACOX1Q15067 660 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 ALG11Q2TAA5 492 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 ARMC12Q5T9G4 340 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 LRRC38Q5VT99 294 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 ALG1LQ6GMV1 187 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 ENPP7Q6UWV6 458 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 CCNYQ8ND76 341 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 ARRDC2Q8TBH0 407 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 MDM1Q8TC05 714 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 FUBP1Q96AE4 644 aaKnown RBP18.43■□□□□ 0.54
CLN3-202ENST00000355477 SCRN2Q96FV2 425 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 LGMNQ99538 433 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 SLC13A1Q9BZW2 595 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 POLR1EQ9GZS1 481 aaKnown RBP18.43■□□□□ 0.54
CLN3-202ENST00000355477 URB1O60287 2271 aaKnown RBP18.43■□□□□ 0.54
CLN3-202ENST00000355477 ZFYVE26Q68DK2 2539 aa18.43■□□□□ 0.54
CLN3-202ENST00000355477 ZFHX4Q86UP3 3567 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 NPIPB15A6NHN6 443 aaPredicted RBP18.42■□□□□ 0.54
CLN3-202ENST00000355477 SRRM3A6NNA2 597 aaPredicted RBP18.42■□□□□ 0.54
CLN3-202ENST00000355477 YY2O15391 372 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 FZD6O60353 706 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 HEXIM1O94992 359 aaKnown RBP18.42■□□□□ 0.54
CLN3-202ENST00000355477 KRT1P04264 644 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 HLA-DQB2P05538 268 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 TSHRP16473 764 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 CTPS1P17812 591 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 MX2P20592 715 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 LHCGRP22888 699 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 SLC1A1P43005 524 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 HK3P52790 923 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 INSM1Q01101 510 aaPredicted RBP18.42■□□□□ 0.54
CLN3-202ENST00000355477 NIPAL4Q0D2K0 466 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 TCEA2Q15560 299 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 DENND2CQ68D51 928 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 SLC9A4Q6AI14 798 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 ZCCHC8Q6NZY4 707 aaKnown RBP18.42■□□□□ 0.54
CLN3-202ENST00000355477 NPNTQ6UXI9 565 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 RD3Q7Z3Z2 195 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 HSD11B1LQ7Z5J1 315 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 TSPAN33Q86UF1 283 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 HID1Q8IV36 788 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 RNF25Q96BH1 459 aaPredicted RBP18.42■□□□□ 0.54
CLN3-202ENST00000355477 HDAC11Q96DB2 347 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 MRFAP1L1Q96HT8 127 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 MCCC1Q96RQ3 725 aaPredicted RBP18.42■□□□□ 0.54
CLN3-202ENST00000355477 GOLPH3Q9H4A6 298 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 PPIL1Q9Y3C6 166 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 TTLL3Q9Y4R7 772 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 PCDHA13Q9Y5I0 950 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 HEY1Q9Y5J3 304 aa18.42■□□□□ 0.54
CLN3-202ENST00000355477 COL27A1Q8IZC6 1860 aaPredicted RBP18.41■□□□□ 0.54
CLN3-202ENST00000355477 TMEM202A6NGA9 273 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 LMO7DNF2Z398 122 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 TPP1O14773 563 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 ALPIP09923 528 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 HTR1BP28222 390 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 TRIM23P36406 574 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 NOP2P46087 812 aaKnown RBP18.41■□□□□ 0.54
CLN3-202ENST00000355477 HADHBP55084 474 aaKnown RBP18.41■□□□□ 0.54
CLN3-202ENST00000355477 SRP54P61011 504 aaKnown RBP18.41■□□□□ 0.54
CLN3-202ENST00000355477 TARDBPQ13148 414 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLN3-202ENST00000355477 PNCKQ6P2M8 343 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 VSIG1Q86XK7 387 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 RHOT1Q8IXI2 618 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 CCDC13Q8IYE1 715 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 TPCN2Q8NHX9 752 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 TBATAQ96M53 351 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 WDR92Q96MX6 357 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 IL12RB2Q99665 862 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 LGR4Q9BXB1 951 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 CCDC86Q9H6F5 360 aaKnown RBP18.41■□□□□ 0.54
CLN3-202ENST00000355477 AMACRQ9UHK6 382 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 SALL4Q9UJQ4 1053 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 ALG6Q9Y672 507 aa18.41■□□□□ 0.54
CLN3-202ENST00000355477 KCNK1O00180 336 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 APOL1O14791 398 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 PRLP01236 227 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 JCHAINP01591 159 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 CYP2A6P11509 494 aaPredicted RBP18.4■□□□□ 0.54
CLN3-202ENST00000355477 HNF1BP35680 557 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 ETV3P41162 512 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 BLKP51451 505 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 E2F1Q01094 437 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 CYP4F3Q08477 520 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 PPIDQ08752 370 aaKnown RBP18.4■□□□□ 0.54
CLN3-202ENST00000355477 CDKN3Q16667 212 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 ESRP1Q6NXG1 681 aaKnown RBP18.4■□□□□ 0.54
CLN3-202ENST00000355477 MFSD7Q6UXD7 560 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 RFLNAQ6ZTI6 216 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 PROSER1Q86XN7 944 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 CCDC170Q8IYT3 715 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 CNTD1Q8N815 330 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 PDCD7Q8N8D1 485 aaKnown RBP18.4■□□□□ 0.54
CLN3-202ENST00000355477 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms