RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 PRDX6P30041 224 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 PPP2R1BP30154 601 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 MYL6P60660 151 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 C9orf131Q5VYM1 1079 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 LRRC55Q6ZSA7 311 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 AHSA2Q719I0 299 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 IRF2BP2Q7Z5L9 587 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 C12orf43Q96C57 262 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 C1GALT1C1Q96EU7 318 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 ERMAPQ96PL5 475 aaPredicted RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 RBM4BQ9BQ04 359 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 RBM4Q9BWF3 364 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 SPATC1LQ9H0A9 340 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 GPN1Q9HCN4 374 aaPredicted RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 TLR8Q9NR97 1041 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 GRHL1Q9NZI5 618 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 DYRK1BQ9Y463 629 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 DCCP43146 1447 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 CNTNAP2Q9UHC6 1331 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 TRAFD1O14545 582 aaPredicted RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 MT-ND1P03886 318 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 SERPINF2P08697 491 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 CRHR1P34998 444 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 SUZ12Q15022 739 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 PGM5Q15124 567 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 HKDC1Q2TB90 917 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 TMEM119Q4V9L6 283 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 ERAP2Q6P179 960 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 CDK20Q8IZL9 346 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 GLIS3Q8NEA6 775 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 RDH11Q8TC12 318 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 ACP6Q9NPH0 428 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 SNX15Q9NRS6 342 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 SLC12A8A0AV02 714 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 KCNK1O00180 336 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 IRF6O14896 467 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 PGRMC2O15173 223 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 PGRP06401 933 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 MYL9P24844 172 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 RPL26P61254 145 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 GCNT1Q02742 428 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 PTCHD4Q6ZW05 846 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 PDSS2Q86YH6 399 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 MPP5Q8N3R9 675 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 C11orf24Q96F05 449 aaPredicted RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 SLC9A7Q96T83 725 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 FBXO44Q9H4M3 255 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 CAPN10Q9HC96 672 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 STARD7Q9NQZ5 370 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 VPS28Q9UK41 221 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 SCAF8Q9UPN6 1271 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 LYVE1Q9Y5Y7 322 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 BBIP1A8MTZ0 92 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 CHURC1-FNTBB4DL54 471 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 BTN3A1O00481 513 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 TP73O15350 636 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 CDC40O60508 579 aaKnown RBP eCLIP10.47□□□□□ -0.73
VCL-201ENST00000211998 FTH1P02794 183 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 RFX3P48380 749 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 CLK2P49760 499 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 EFEMP1Q12805 493 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 MAMLD1Q13495 774 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 GARNL3Q5VVW2 1013 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 SLC25A24Q6NUK1 477 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 ASCC1Q8N9N2 400 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 FAM156AQ8NDB6 213 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 AKAP1Q92667 903 aaKnown RBP eCLIP10.47□□□□□ -0.735e-7■■□□□ 14.2
VCL-201ENST00000211998 CPB2Q96IY4 423 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 ZNF317Q96PQ6 595 aaPredicted RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 FEM1AQ9BSK4 669 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 PRKD2Q9BZL6 878 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 MIEF1Q9NQG6 463 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 CATSPERZQ9NTU4 200 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 RPTORQ8N122 1335 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 H3BRB1 525 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 DYRK3O43781 588 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 NPM3O75607 178 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 IGFBP5P24593 272 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 TGM3Q08188 693 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 FSCN1Q16658 493 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 CNSTQ6PJW8 725 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 PTGR2Q8N8N7 351 aaPredicted RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 SLC44A1Q8WWI5 657 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 KAT5Q92993 513 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 EBNA1BP2Q99848 306 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 TUT1Q9H6E5 874 aaKnown RBP10.47□□□□□ -0.73
VCL-201ENST00000211998 KLHL28Q9NXS3 571 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 MTRRQ9UBK8 725 aa10.47□□□□□ -0.73
VCL-201ENST00000211998 A0A0J9YYE9 177 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 CARNS1A5YM72 827 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 FAM155BO75949 473 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 IFNGR2P38484 337 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 MAGEA2P43356 314 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 OR52K1Q8NGK4 314 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 PIH1D2Q8WWB5 315 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 FDXACB1Q9BRP7 624 aaPredicted RBP10.46□□□□□ -0.73
VCL-201ENST00000211998 ASB7Q9H672 318 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 NT5MQ9NPB1 228 aa10.46□□□□□ -0.73
VCL-201ENST00000211998 CCDC177Q9NQR7 707 aaPredicted RBP10.46□□□□□ -0.73
VCL-201ENST00000211998 TAS2R13Q9NYV9 303 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms