RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PFKFB4Q16877 469 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 P3H1Q32P28 736 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 ZFP69Q49AA0 526 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SYTL3Q4VX76 610 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 LRRC24Q50LG9 513 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 HSP90AB2PQ58FF8 381 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SLC25A30Q5SVS4 291 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CCDC181Q5TID7 509 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 NCAPH2Q6IBW4 605 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 DGAT2L7PQ6IED9 249 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 PPP4R4Q6NUP7 873 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 RINT1Q6NUQ1 792 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 MTFR2Q6P444 385 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SLC27A1Q6PCB7 646 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 GJB7Q6PEY0 223 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 IGFL3Q6UXB1 125 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 RAB11FIP2Q7L804 512 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 ANKS1BQ7Z6G8 1248 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 GALNT7Q86SF2 657 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SERPINA11Q86U17 422 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 TMEM200AQ86VY9 491 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 GATAD2AQ86YP4 633 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 HERC6Q8IVU3 1022 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 BRSK2Q8IWQ3 736 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CCAR1Q8IX12 1150 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 LMNTD2Q8IXW0 634 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CCDC146Q8IYE0 955 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SYTL1Q8IYJ3 562 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 FAM186BQ8IYM0 893 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 NRSN1Q8IZ57 195 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 NKAPQ8N5F7 415 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 AADATQ8N5Z0 425 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 PTGR2Q8N8N7 351 aaPredicted RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 ENDOVQ8N8Q3 282 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 CCDC150Q8NCX0 1101 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SETD9Q8NE22 299 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SPATA22Q8NHS9 363 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SPPL3Q8TCT6 385 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 GPT2Q8TD30 523 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 TMEM170AQ8WVE7 144 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 POF1BQ8WVV4 589 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 HMGB4Q8WW32 186 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 THAP4Q8WY91 577 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 TANKQ92844 425 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 RILPL2Q969X0 211 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 TMEM18Q96B42 140 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 ARRDC3Q96B67 414 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 KTI12Q96EK9 354 aaPredicted RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 LRFN5Q96NI6 719 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 EIF3CQ99613 913 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 CLSTN3Q9BQT9 956 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SYT11Q9BT88 431 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 LRRC1Q9BTT6 524 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 TMEM120AQ9BXJ8 343 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 LMAN2LQ9H0V9 348 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CXorf56Q9H5V9 222 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CCDC134Q9H6E4 229 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 MVB12BQ9H7P6 319 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 PLCB1Q9NQ66 1216 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 TLR8Q9NR97 1041 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 ABCB10Q9NRK6 738 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 RASSF1Q9NS23 344 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 HCFC1R1Q9NWW0 138 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 ARL15Q9NXU5 204 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 BARHL2Q9NY43 387 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 GRHL1Q9NZI5 618 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 NDUFAF4Q9P032 175 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 DLGAP2Q9P1A6 1054 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 KLQ9UEF7 1012 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 HERC5Q9UII4 1024 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 CD207Q9UJ71 328 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 RASAL2Q9UJF2 1139 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 FEM1BQ9UK73 627 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CELA1Q9UNI1 258 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 C19orf53Q9UNZ5 99 aaPredicted RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 PCDHA10Q9Y5I2 948 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CLDN16Q9Y5I7 305 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 MORC2Q9Y6X9 1032 aaPredicted RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 TAF1P21675 1872 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 ADGRF5Q8IZF2 1346 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 KIAA1210Q9ULL0 1709 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3DA0A087WVF3 549 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3IA0A087WXS9 549 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3EA0A087X179 549 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3KA0A087X1G2 549 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 A0A0U1RQF3 1178 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TARSL2A2RTX5 802 aaKnown RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3BA6NDS4 549 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3FA6NER0 549 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 DDTLA6NHG4 134 aaPredicted RBP0.48□□□□□ -2.33
VPS35-212ENST00000640313 EFCAB8A8MWE9 144 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D3LB9A6J9 549 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 J3KR12 359 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 TAF4O00268 1085 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 CHL1O00533 1208 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 EBAG9O00559 213 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 WNT9BO14905 357 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 LDLRAD4O15165 306 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 MID1O15344 667 aa0.48□□□□□ -2.33
VPS35-212ENST00000640313 HNRNPRO43390 633 aaKnown RBP0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms