RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CLDN2P57739 230 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 NXPH1P58417 271 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 NIPAL4Q0D2K0 466 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 ZNF211Q13398 564 aaPredicted RBP20.81■□□□□ 0.92
CLN3-240ENST00000631023 ZNF423Q2M1K9 1284 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 USP45Q70EL2 814 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 ABI3BPQ7Z7G0 1075 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 OXR1Q8N573 874 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 ACTL9Q8TC94 416 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 QKIQ96PU8 341 aaKnown RBP eCLIP20.81■□□□□ 0.92
CLN3-240ENST00000631023 KLF6Q99612 283 aaPredicted RBP20.81■□□□□ 0.92
CLN3-240ENST00000631023 CEP41Q9BYV8 373 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 SPTBN2O15020 2390 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 DCDC2BA2VCK2 349 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 RAD51BO15315 384 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 ELFN1P0C7U0 828 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 C6P13671 934 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 CD86P42081 329 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 EPHB1P54762 984 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 RPL26P61254 145 aaKnown RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 SEMG2Q02383 582 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 SUZ12Q15022 739 aaKnown RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 NOMO1Q15155 1222 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 RPS6KA1Q15418 735 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 AADACL2Q6P093 401 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 GCNT7Q6ZNI0 430 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 DGLUCYQ7Z3D6 616 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 TTC13Q8NBP0 860 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 TRIM58Q8NG06 486 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 HTR3CQ8WXA8 447 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 CENPTQ96BT3 561 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 SCRN2Q96FV2 425 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 BMFQ96LC9 184 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 TEKT5Q96M29 485 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 ELF4Q99607 663 aaPredicted RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 TDRD1Q9BXT4 1180 aaKnown RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 SLC25A51Q9H1U9 297 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 IL21RQ9HBE5 538 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 TM7SF3Q9NS93 570 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 RPL26L1Q9UNX3 145 aaKnown RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 FNDC3AQ9Y2H6 1198 aaKnown RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 H0Y8X5 98 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 KCNK3O14649 394 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 FZD6O60353 706 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 ZNF189O75820 626 aaPredicted RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 PTPN3P26045 913 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 VIPR1P32241 457 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 ARRB1P49407 418 aaPredicted RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 CCT8P50990 548 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 OTUD4Q01804 1114 aaKnown RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 RALGDSQ12967 914 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 LIPIQ6XZB0 460 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 KYAT3Q6YP21 454 aaKnown RBP20.8■□□□□ 0.92
CLN3-240ENST00000631023 Q6ZSR6 202 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 PIH1D2Q8WWB5 315 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 HERPUD2Q9BSE4 406 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 PCDH9Q9HC56 1237 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 B4GALT6Q9UBX8 382 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 CHKBQ9Y259 395 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 PPIL1Q9Y3C6 166 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 PCDHGB2Q9Y5G2 931 aa20.8■□□□□ 0.92
CLN3-240ENST00000631023 POM121BA6NF01 834 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 A8MX80 341 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 YKT6O15498 198 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 PDHA1P08559 390 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 RABIFP47224 123 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 EIF3EP60228 445 aaKnown RBP20.79■□□□□ 0.92
CLN3-240ENST00000631023 SKOR1P84550 965 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 GSE1Q14687 1217 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 LRRC14Q15048 493 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 AGERQ15109 404 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 SEL1L2Q5TEA6 688 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 PTAR1Q7Z6K3 402 aaPredicted RBP20.79■□□□□ 0.92
CLN3-240ENST00000631023 OR13H1Q8NG92 308 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 IMP4Q96G21 291 aaKnown RBP20.79■□□□□ 0.92
CLN3-240ENST00000631023 PDLIM2Q96JY6 352 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 ADGRE3Q9BY15 652 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 SLC32A1Q9H598 525 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 GLOD4Q9HC38 313 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 KCTD5Q9NXV2 234 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 KLHL8Q9P2G9 620 aaPredicted RBP20.79■□□□□ 0.92
CLN3-240ENST00000631023 TRHDEQ9UKU6 1024 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 COQ6Q9Y2Z9 468 aa20.79■□□□□ 0.92
CLN3-240ENST00000631023 ARID1BQ8NFD5 2236 aaPredicted RBP20.78■□□□□ 0.92
CLN3-240ENST00000631023 TOR1BO14657 336 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 MMP2P08253 660 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 RBP3P10745 1247 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 WASHC5Q12768 1159 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 ARHGEF7Q14155 803 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 IHHQ14623 411 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 SLC14A2Q15849 920 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 MEI1Q5TIA1 1274 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 PID1Q7Z2X4 250 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 SPATS2Q86XZ4 545 aaKnown RBP20.78■□□□□ 0.92
CLN3-240ENST00000631023 CDKL3Q8IVW4 592 aaPredicted RBP20.78■□□□□ 0.92
CLN3-240ENST00000631023 MCCC1Q96RQ3 725 aaPredicted RBP20.78■□□□□ 0.92
CLN3-240ENST00000631023 RBM15Q96T37 977 aaKnown RBP eCLIP20.78■□□□□ 0.92
CLN3-240ENST00000631023 DNPEPQ9ULA0 475 aa20.78■□□□□ 0.92
CLN3-240ENST00000631023 A0A1B0GTQ1 180 aa20.77■□□□□ 0.92
CLN3-240ENST00000631023 ZSCAN12O43309 604 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms