RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 SEPT3Q9UH03 358 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 PDCD11Q14690 1871 aaKnown RBP10.58□□□□□ -0.72
VPS11-208ENST00000621676 TYROBPO43914 113 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 IL1BP01584 269 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 MXRA7P84157 204 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 PFKPQ01813 784 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 PTPRNQ16849 979 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 CGB2Q6NT52 195 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 MSANTD2Q6P1R3 559 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 ZNF683Q8IZ20 524 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 ANKS4BQ8N8V4 417 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 CKAP2Q8WWK9 683 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 FGF13Q92913 245 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 E2F7Q96AV8 911 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 RNF31Q96EP0 1072 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 KLHL32Q96NJ5 620 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 CASS4Q9NQ75 786 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 MOCS1Q9NZB8 636 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 HEY2Q9UBP5 337 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 DNAJC16Q9Y2G8 782 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 PTGDR2Q9Y5Y4 395 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 NUMBLQ9Y6R0 609 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 GREB1Q4ZG55 1949 aa10.58□□□□□ -0.72
VPS11-208ENST00000621676 DOCK8Q8NF50 2099 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 FAM163BP0C2L3 166 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 XPAP23025 273 aaPredicted RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 SPRP35270 261 aaPredicted RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 ECT2LQ008S8 904 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 EIF4EBP2Q13542 120 aaPredicted RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 C18orf21Q32NC0 220 aaPredicted RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 SLC44A4Q53GD3 710 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 KCTD11Q693B1 232 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 PSRC1Q6PGN9 363 aaPredicted RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 CCDC149Q6ZUS6 474 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 FITM2Q8N6M3 262 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 RNF148Q8N7C7 305 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 IMP4Q96G21 291 aaKnown RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 TSNARE1Q96NA8 513 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 CCDC68Q9H2F9 335 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 RC3H2Q9HBD1 1191 aaKnown RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 FBRSL1Q9HCM7 1045 aaKnown RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 HAUS2Q9NVX0 235 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 SLC24A2Q9UI40 661 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 TCAF1Q9Y4C2 921 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 CACNA1EQ15878 2313 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 NUP214P35658 2090 aaPredicted RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 OR2AG2A6NM03 316 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 A8MUI8 341 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 NDUFS3O75489 264 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 ZDHHC11BP0C7U3 371 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 KCNA5P22460 613 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 MAT2AP31153 395 aaKnown RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 MC4RP32245 332 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 HCAR3P49019 387 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 ARSIQ5FYB1 569 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 CHST9Q7L1S5 443 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 PDZD8Q8NEN9 1154 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 NUDCD1Q96RS6 583 aa10.57□□□□□ -0.72
VPS11-208ENST00000621676 DUS2Q9NX74 493 aaKnown RBP10.57□□□□□ -0.72
VPS11-208ENST00000621676 ASCC3Q8N3C0 2202 aaKnown RBP10.56□□□□□ -0.72
VPS11-208ENST00000621676 FAM159BA6NKW6 160 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 MEI4A8MW99 385 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 H0Y3Z8 333 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 H3BNC9 293 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 MYO1CO00159 1063 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 MTSS1O43312 755 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 SRP72O76094 671 aaKnown RBP10.56□□□□□ -0.72
VPS11-208ENST00000621676 RHOBTB1O94844 696 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 CD160O95971 181 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 LINC00271P0C7V0 271 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 RECQLP46063 649 aaPredicted RBP10.56□□□□□ -0.72
VPS11-208ENST00000621676 KCNC1P48547 511 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 CDKN2DP55273 166 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 BCL2L1Q07817 233 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 FOXD4Q12950 439 aaPredicted RBP10.56□□□□□ -0.72
VPS11-208ENST00000621676 PLEKHG6Q3KR16 790 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 SGO1Q5FBB7 561 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 CFAP157Q5JU67 520 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 TMEM198Q66K66 360 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 TMEM215Q68D42 235 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 TANGO2Q6ICL3 276 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 ZSWIM9Q86XI8 627 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 OR13J1Q8NGT2 312 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 APOPT1Q96IL0 206 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 C1orf74Q96LT6 269 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 NUF2Q9BZD4 464 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 MTIF3Q9H2K0 278 aaKnown RBP10.56□□□□□ -0.72
VPS11-208ENST00000621676 HBS1LQ9Y450 684 aaKnown RBP10.56□□□□□ -0.72
VPS11-208ENST00000621676 E5RI56 91 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 ZBTB14O43829 449 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 SNX3O60493 162 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 CLASP2O75122 1294 aaKnown RBP10.56□□□□□ -0.72
VPS11-208ENST00000621676 KATNA1O75449 491 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 SUPT7LO94864 414 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 HSPA4LO95757 839 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 GLP2RO95838 553 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 ENO1P06733 434 aaKnown RBP10.56□□□□□ -0.72
VPS11-208ENST00000621676 EPHA3P29320 983 aa10.56□□□□□ -0.72
VPS11-208ENST00000621676 IL10RBQ08334 325 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms