RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 ESRRAP11474 423 aaPredicted RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 FOSL2P15408 326 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 AVPR1AP37288 418 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 SCNN1BP51168 640 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 SGSHP51688 502 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 DNAJB13P59910 316 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 HTRA4P83105 476 aaPredicted RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 PRKAA1Q13131 559 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 RCN2Q14257 317 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 IHHQ14623 411 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 CFAP157Q5JU67 520 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 MPP7Q5T2T1 576 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 HECTD2Q5U5R9 776 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 CNSTQ6PJW8 725 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 AFTPHQ6ULP2 937 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 C16orf59Q7L2K0 433 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 PTAR1Q7Z6K3 402 aaPredicted RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 TMEM150AQ86TG1 271 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 CENPLQ8N0S6 344 aaPredicted RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 ARHGAP24Q8N264 748 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 CARNMT1Q8N4J0 409 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 ACVR1CQ8NER5 493 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 KCTD4Q8WVF5 259 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 SLC7A6OSQ96CW6 309 aaPredicted RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 PTCD3Q96EY7 689 aaKnown RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 TCF12Q99081 682 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 OMDQ99983 421 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 TDRD1Q9BXT4 1180 aaKnown RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 C20orf27Q9GZN8 174 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 DRC3Q9H069 523 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 ILKAPQ9H0C8 392 aaPredicted RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 CDH19Q9H159 772 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 TLE6Q9H808 572 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 POPDC3Q9HBV1 291 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 CATSPERZQ9NTU4 200 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 INTS10Q9NVR2 710 aaKnown RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 NLE1Q9NVX2 485 aaPredicted RBP11.31□□□□□ -0.6
LIG3-204ENST00000585740 VTI1BQ9UEU0 232 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 PRKAG2Q9UGJ0 569 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 VPS9D1Q9Y2B5 631 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 VWA7Q9Y334 891 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 SH3BP1Q9Y3L3 701 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 RAP2CQ9Y3L5 183 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 INSL6Q9Y581 213 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 CPQQ9Y646 472 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 GBF1Q92538 1859 aa11.31□□□□□ -0.6
LIG3-204ENST00000585740 E2F8A0AVK6 867 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 TARM1B6A8C7 271 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 F8W8V4 182 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 TNFRSF10AO00220 468 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 CD3EAPO15446 510 aaKnown RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 TGM5O43548 720 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 ZMPSTE24O75844 475 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 TMCC1O94876 653 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 CBX6O95503 412 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 CXCL14O95715 111 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 S1PR4O95977 384 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 GOT2P00505 430 aaKnown RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 FGBP02675 491 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 CNPP09543 421 aaKnown RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 ACRP10323 421 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 ATP5F1P24539 256 aaPredicted RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 DDX6P26196 483 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIG3-204ENST00000585740 GABRR2P28476 465 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 SLC8A1P32418 973 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 CA8P35219 290 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 MAPK8P45983 427 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 ARF5P84085 180 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 CDH18Q13634 790 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 GALNT3Q14435 633 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 ACAP2Q15057 778 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 SHHQ15465 462 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 MPPE1Q53F39 396 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 RETSATQ6NUM9 610 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 LILRA6Q6PI73 481 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 NCEH1Q6PIU2 408 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 HTR3DQ70Z44 454 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 SLC22A9Q8IVM8 553 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 CEP97Q8IW35 865 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 MFSD6LQ8IWD5 586 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 SUGP1Q8IWZ8 645 aaKnown RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 FSTL5Q8N475 847 aaPredicted RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 KIF2BQ8N4N8 673 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 AFAP1L2Q8N4X5 818 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 ARL14EPQ8N8R7 260 aaPredicted RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 DCAF4L2Q8NA75 395 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 OR52K2Q8NGK3 314 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 OR4L1Q8NH43 312 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 AUTS2Q8WXX7 1259 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 CLP1Q92989 425 aaKnown RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 WBP2Q969T9 261 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 NXNL1Q96CM4 212 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 RMDN1Q96DB5 314 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 DNAJC1Q96KC8 554 aaKnown RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 TBATAQ96M53 351 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 GPR78Q96P69 363 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 BTBD10Q9BSF8 475 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 GATA5Q9BWX5 397 aaPredicted RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 NMUR2Q9GZQ4 415 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 TTYH1Q9H313 450 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms