RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SLCO5A1Q9H2Y9 848 aa5.38□□□□□ -1.55
NUP88-213ENST00000576862 MAGEE1Q9HCI5 957 aa5.38□□□□□ -1.55
NUP88-213ENST00000576862 PAM16Q9Y3D7 125 aa5.38□□□□□ -1.55
NUP88-213ENST00000576862 SCINQ9Y6U3 715 aa5.38□□□□□ -1.55
NUP88-213ENST00000576862 KDM3AQ9Y4C1 1321 aa5.38□□□□□ -1.55
NUP88-213ENST00000576862 CC2D2AQ9P2K1 1620 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 CPED1A4D0V7 1026 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 BCAT2O15382 392 aaPredicted RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 ZBTB11O95625 1053 aaPredicted RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 FGF3P11487 239 aaPredicted RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 HOXB6P17509 224 aaKnown RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 ABCD1P33897 745 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 SETQ01105 290 aaPredicted RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 ITGADQ13349 1161 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 DHX34Q14147 1143 aaKnown RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 HIST2H2BCQ6DN03 193 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 HIST2H2BDQ6DRA6 164 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 INO80CQ6PI98 192 aaPredicted RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 PRSS57Q6UWY2 283 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.37□□□□□ -1.55
NUP88-213ENST00000576862 CREB3L2Q70SY1 520 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 MTSS1LQ765P7 747 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 BHLHA9Q7RTU4 235 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 C16orf82Q7Z2V1 217 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 PGBD5Q8N414 524 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 ZNF114Q8NC26 417 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 WASF1Q92558 559 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 PABPC5Q96DU9 382 aaKnown RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 NR1H4Q96RI1 486 aaPredicted RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 CTAGE1Q96RT6 745 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 ESRP2Q9H6T0 727 aaKnown RBP5.37□□□□□ -1.55
NUP88-213ENST00000576862 BRF2Q9HAW0 419 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 PREBQ9HCU5 417 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 SLC9A2Q9UBY0 812 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 CAMK2AQ9UQM7 478 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 WRNQ14191 1432 aaPredicted RBP eCLIP5.37□□□□□ -1.55
NUP88-213ENST00000576862 CFTRP13569 1480 aa5.37□□□□□ -1.55
NUP88-213ENST00000576862 ZIC3O60481 467 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 SEC31AO94979 1220 aaKnown RBP5.36□□□□□ -1.55
NUP88-213ENST00000576862 MMP2P08253 660 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 GPTP24298 496 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 SSTR2P30874 369 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 HNRNPH1P31943 449 aaKnown RBP5.36□□□□□ -1.55
NUP88-213ENST00000576862 ART1P52961 327 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 TUBA1BP68363 451 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 DDR1Q08345 913 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 TCTN1Q2MV58 587 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 MMEL1Q495T6 779 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 KLHL22Q53GT1 634 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 HSP90AB4PQ58FF6 505 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 XKR9Q5GH70 373 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 C9orf57Q5W0N0 161 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 ZC3HC1Q86WB0 502 aaKnown RBP5.36□□□□□ -1.55
NUP88-213ENST00000576862 ARMC8Q8IUR7 673 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 ZCCHC9Q8N567 271 aaKnown RBP5.36□□□□□ -1.55
NUP88-213ENST00000576862 SCMH1Q96GD3 660 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 FAM84BQ96KN1 310 aaPredicted RBP5.36□□□□□ -1.55
NUP88-213ENST00000576862 SEC62Q99442 399 aaKnown RBP5.36□□□□□ -1.55
NUP88-213ENST00000576862 H2AFJQ9BTM1 129 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 GAREM1Q9H706 876 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 WDR26Q9H7D7 661 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 MKKSQ9NPJ1 570 aaPredicted RBP5.36□□□□□ -1.55
NUP88-213ENST00000576862 CDC14AQ9UNH5 594 aa5.36□□□□□ -1.55
NUP88-213ENST00000576862 TRIP12Q14669 1992 aaPredicted RBP5.36□□□□□ -1.55
NUP88-213ENST00000576862 SOGA1O94964 1423 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 SEC14L5O43304 696 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 MTA2O94776 668 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 IRF1P10914 325 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 CPOXP36551 454 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 BRWD1-AS2P59051 145 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 MYBPHQ13203 477 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 C2orf68Q2NKX9 166 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 LCTLQ6UWM7 567 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 B3GNT6Q6ZMB0 384 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 NEK10Q6ZWH5 1172 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 LINGO2Q7L985 606 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 SLC46A3Q7Z3Q1 461 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 RBMXL3Q8N7X1 1067 aaKnown RBP5.35□□□□□ -1.55
NUP88-213ENST00000576862 SCCPDHQ8NBX0 429 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 AGBL3Q8NEM8 1001 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 BEST2Q8NFU1 509 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 CADM4Q8NFZ8 388 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 KCNN2Q9H2S1 579 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 C6orf106Q9H6K1 298 aaPredicted RBP5.35□□□□□ -1.55
NUP88-213ENST00000576862 JMJD4Q9H9V9 463 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 PCDHB16Q9NRJ7 776 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 TMEM98Q9Y2Y6 226 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 STON1Q9Y6Q2 735 aa5.35□□□□□ -1.55
NUP88-213ENST00000576862 IGLV5-37A0A075B6J1 123 aa5.34□□□□□ -1.55
NUP88-213ENST00000576862 hDV102S1A0JD36 115 aa5.34□□□□□ -1.55
NUP88-213ENST00000576862 SNAP23O00161 211 aa5.34□□□□□ -1.55
NUP88-213ENST00000576862 ACOT8O14734 319 aa5.34□□□□□ -1.55
NUP88-213ENST00000576862 TGFB1I1O43294 461 aa5.34□□□□□ -1.55
NUP88-213ENST00000576862 NDUFS7O75251 213 aa5.34□□□□□ -1.55
NUP88-213ENST00000576862 IGHV4-30-4P0DP06 118 aa5.34□□□□□ -1.55
NUP88-213ENST00000576862 ARL1P40616 181 aaPredicted RBP5.34□□□□□ -1.55
NUP88-213ENST00000576862 GABRB2P47870 512 aa5.34□□□□□ -1.55
NUP88-213ENST00000576862 HARS2P49590 506 aaKnown RBP5.34□□□□□ -1.55
NUP88-213ENST00000576862 GNAQP50148 359 aa5.34□□□□□ -1.55
NUP88-213ENST00000576862 CASP6P55212 293 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms