RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RAB11FIP2Q7L804 512 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 SRLQ86TD4 932 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 MCOLN2Q8IZK6 566 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 PLA2G15Q8NCC3 412 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 ECHDC3Q96DC8 303 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 PDXPQ96GD0 296 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 CELF6Q96J87 481 aaKnown RBP21.2■□□□□ 0.98
VPS53-216ENST00000574029 SLC39A8Q9C0K1 460 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 STRADBQ9C0K7 418 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 LRRN3Q9H3W5 708 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 ARHGAP42A6NI28 874 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 SERPINA4P29622 427 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 SLC5A2P31639 672 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 PAPOLAP51003 745 aaKnown RBP21.19■□□□□ 0.98
VPS53-216ENST00000574029 KIAA1024LP59773 190 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 ZSCAN23Q3MJ62 389 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 OGFOD3Q6PK18 319 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 RBM43Q6ZSC3 357 aaKnown RBP21.19■□□□□ 0.98
VPS53-216ENST00000574029 TSEN2Q8NCE0 465 aaKnown RBP21.19■□□□□ 0.98
VPS53-216ENST00000574029 OR1E3Q8WZA6 343 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 FUBP1Q96AE4 644 aaKnown RBP21.19■□□□□ 0.98
VPS53-216ENST00000574029 MED8Q96G25 268 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 TMEM74Q96NL1 305 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 ERGIC2Q96RQ1 377 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 CCNL2Q96S94 520 aaPredicted RBP21.19■□□□□ 0.98
VPS53-216ENST00000574029 FOXP3Q9BZS1 431 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 ATP13A3Q9H7F0 1226 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 GPATCH2LQ9NWQ4 482 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.19■□□□□ 0.98
VPS53-216ENST00000574029 APPL1Q9UKG1 709 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 ACSL6Q9UKU0 697 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 ATXN7L1Q9ULK2 861 aaPredicted RBP21.19■□□□□ 0.98
VPS53-216ENST00000574029 AP4E1Q9UPM8 1137 aa21.19■□□□□ 0.98
VPS53-216ENST00000574029 ZNF462Q96JM2 2506 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 EIF3CLB5ME19 914 aaKnown RBP21.18■□□□□ 0.98
VPS53-216ENST00000574029 B8ZZF3 427 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 EFSO43281 561 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 PALMO75781 387 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 RECQL5O94762 991 aaPredicted RBP21.18■□□□□ 0.98
VPS53-216ENST00000574029 DESP17661 470 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 UBXN1Q04323 297 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 AFMIDQ63HM1 303 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 LIPIQ6XZB0 460 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 ANKRD20A12PQ8NF67 263 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 OR56A4Q8NGH8 313 aa21.18■□□□□ 0.98
VPS53-216ENST00000574029 EIF3CQ99613 913 aaKnown RBP21.18■□□□□ 0.98
VPS53-216ENST00000574029 COL6A6A6NMZ7 2263 aa21.17■□□□□ 0.98
VPS53-216ENST00000574029 TMEM202A6NGA9 273 aa21.17■□□□□ 0.98
VPS53-216ENST00000574029 LRRC10BA6NIK2 292 aa21.17■□□□□ 0.98
VPS53-216ENST00000574029 CACNB4O00305 520 aaPredicted RBP21.17■□□□□ 0.98
VPS53-216ENST00000574029 EEF2KO00418 725 aaKnown RBP21.17■□□□□ 0.98
VPS53-216ENST00000574029 HOXC4P09017 264 aaPredicted RBP21.17■□□□□ 0.98
VPS53-216ENST00000574029 PNLIPP16233 465 aa21.17■□□□□ 0.98
VPS53-216ENST00000574029 GLB1P16278 677 aa21.17■□□□□ 0.98
VPS53-216ENST00000574029 NSUN2Q08J23 767 aaKnown RBP eCLIP21.17■□□□□ 0.98
VPS53-216ENST00000574029 CA9Q16790 459 aa21.17■□□□□ 0.98
VPS53-216ENST00000574029 DPPA4Q7L190 304 aa21.17■□□□□ 0.98
VPS53-216ENST00000574029 CCNJLQ8IV13 435 aa21.17■□□□□ 0.98
VPS53-216ENST00000574029 FGF22Q9HCT0 170 aa21.17■□□□□ 0.98
VPS53-216ENST00000574029 TNFRSF10CO14798 259 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 NOBOXO60393 691 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 HGFP14210 728 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 FERP16591 822 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 GM2AP17900 193 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 TRIM23P36406 574 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 ZFP36L1Q07352 338 aaKnown RBP21.16■□□□□ 0.98
VPS53-216ENST00000574029 BCL2L1Q07817 233 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 MAMLD1Q13495 774 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 RFTN1Q14699 578 aaPredicted RBP21.16■□□□□ 0.98
VPS53-216ENST00000574029 CERCAMQ5T4B2 595 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 ERMARDQ5T6L9 678 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 TAF8Q7Z7C8 310 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 ARHGAP12Q8IWW6 846 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 ARFGAP1Q8N6T3 406 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 SYT11Q9BT88 431 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 CINPQ9BW66 212 aaPredicted RBP21.16■□□□□ 0.98
VPS53-216ENST00000574029 DHX35Q9H5Z1 703 aaKnown RBP21.16■□□□□ 0.98
VPS53-216ENST00000574029 MRPL40Q9NQ50 206 aaKnown RBP21.16■□□□□ 0.98
VPS53-216ENST00000574029 TAS2R14Q9NYV8 317 aa21.16■□□□□ 0.98
VPS53-216ENST00000574029 TRAFD1O14545 582 aaPredicted RBP21.15■□□□□ 0.98
VPS53-216ENST00000574029 NVLO15381 856 aaKnown RBP21.15■□□□□ 0.98
VPS53-216ENST00000574029 ELFN1P0C7U0 828 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 CCDC172P0C7W6 258 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 KELP23276 732 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 PSMA2P25787 234 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 POLR2LP62875 67 aaKnown RBP21.15■□□□□ 0.98
VPS53-216ENST00000574029 MYL5Q02045 173 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 IL10RBQ08334 325 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 C14orf28Q4W4Y0 310 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 PPP1R2P3Q6NXS1 205 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 RFX8Q6ZV50 586 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 APTXQ7Z2E3 356 aaKnown RBP21.15■□□□□ 0.98
VPS53-216ENST00000574029 IRF2BP2Q7Z5L9 587 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 JAMLQ86YT9 394 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 SFTPA2Q8IWL1 248 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 Q8N9G6 341 aaPredicted RBP21.15■□□□□ 0.98
VPS53-216ENST00000574029 FAM46DQ8NEK8 389 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 NSMCE3Q96MG7 304 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 PEBP4Q96S96 227 aa21.15■□□□□ 0.98
VPS53-216ENST00000574029 KCTD15Q96SI1 283 aaPredicted RBP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms