RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 MT-CO3P00414 261 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 ANXA6P08133 673 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 KRT7P08729 469 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 CTSEP14091 401 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 BLKP51451 505 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 ARSEP51690 589 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 ITKQ08881 620 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 DPYSL3Q14195 570 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 MESDQ14696 234 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 ACOX1Q15067 660 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 CDKN3Q16667 212 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 ANKRD20A8PQ5CZ79 823 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 DPPA4Q7L190 304 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 HID1Q8IV36 788 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 PCDH19Q8TAB3 1148 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 RFFLQ8WZ73 363 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 GLMNQ92990 594 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 TSACCQ96A04 125 aaPredicted RBP20.83■□□□□ 0.93
CLN3-219ENST00000565778 NT5MQ9NPB1 228 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 ABHD10Q9NUJ1 306 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 NCKIPSDQ9NZQ3 722 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 DOLKQ9UPQ8 538 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 RAXQ9Y2V3 346 aa20.83■□□□□ 0.93
CLN3-219ENST00000565778 GOLGA4Q13439 2230 aaKnown RBP20.83■□□□□ 0.93
CLN3-219ENST00000565778 YY2O15391 372 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 HTRA2O43464 458 aaPredicted RBP20.82■□□□□ 0.92
CLN3-219ENST00000565778 OPA1O60313 960 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 SOCS5O75159 536 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 TMEM253P0C7T8 217 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 TSHRP16473 764 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 CR2P20023 1033 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 HK3P52790 923 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 TAS2R40P59535 323 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 RALGDSQ12967 914 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 MTM1Q13496 603 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 NFATC4Q14934 902 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 CACTIN-AS1Q8N1I8 211 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 PLA2G15Q8NCC3 412 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 ATL2Q8NHH9 583 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 SLC35G2Q8TBE7 412 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 IFI44Q8TCB0 444 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 TBATAQ96M53 351 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 MGME1Q9BQP7 344 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 NHEJ1Q9H9Q4 299 aaPredicted RBP20.82■□□□□ 0.92
CLN3-219ENST00000565778 B4GALT6Q9UBX8 382 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 PHTF1Q9UMS5 762 aa20.82■□□□□ 0.92
CLN3-219ENST00000565778 LY6G6EA0A0G2JKS1 128 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 LMO7DNF2Z398 122 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 RASGRP1O95267 797 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 CPP00450 1065 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 GP1BAP07359 652 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 NFKBIAP25963 317 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 GARSP41250 739 aaKnown RBP20.81■□□□□ 0.92
CLN3-219ENST00000565778 RPIAP49247 311 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 SRP54P61011 504 aaKnown RBP20.81■□□□□ 0.92
CLN3-219ENST00000565778 PAFAH1B3Q15102 231 aaKnown RBP20.81■□□□□ 0.92
CLN3-219ENST00000565778 NR0B2Q15466 257 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 RALGPS1Q5JS13 557 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 DENND2CQ68D51 928 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 NCBP2-AS2Q69YL0 99 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 NXPE2Q96DL1 559 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 ZNF670Q9BS34 389 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 LRRC61Q9BV99 259 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 NRSN2Q9GZP1 204 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 CLPBQ9H078 707 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 SPTLC3Q9NUV7 552 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 RALYQ9UKM9 306 aaKnown RBP20.81■□□□□ 0.92
CLN3-219ENST00000565778 U3KQA8 63 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 DMXL2Q8TDJ6 3036 aa20.81■□□□□ 0.92
CLN3-219ENST00000565778 WDFY3Q8IZQ1 3526 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 MFSD11O43934 449 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 MFAP3LO75121 409 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 MAP3K6O95382 1288 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 TNFP01375 233 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 GALNT2Q10471 571 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 TRAF2Q12933 501 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 ELOCQ15369 112 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 TCEA2Q15560 299 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 IFI16Q16666 785 aaKnown RBP20.8■□□□□ 0.92
CLN3-219ENST00000565778 ALG11Q2TAA5 492 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 ARMC12Q5T9G4 340 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 TIGD7Q6NT04 549 aaPredicted RBP20.8■□□□□ 0.92
CLN3-219ENST00000565778 C19orf48Q6RUI8 117 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 EFL1Q7Z2Z2 1120 aaKnown RBP20.8■□□□□ 0.92
CLN3-219ENST00000565778 FSTL5Q8N475 847 aaPredicted RBP20.8■□□□□ 0.92
CLN3-219ENST00000565778 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.8■□□□□ 0.92
CLN3-219ENST00000565778 TEX26Q8N6G2 289 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 DCBLD1Q8N8Z6 715 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 MAPK15Q8TD08 544 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 SCG3Q8WXD2 468 aaKnown RBP20.8■□□□□ 0.92
CLN3-219ENST00000565778 WDR92Q96MX6 357 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 SEMA3CQ99985 751 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 KLQ9UEF7 1012 aa20.8■□□□□ 0.92
CLN3-219ENST00000565778 EME2A4GXA9 379 aaPredicted RBP20.79■□□□□ 0.92
CLN3-219ENST00000565778 AKR1B15C9JRZ8 316 aaPredicted RBP20.79■□□□□ 0.92
CLN3-219ENST00000565778 CACNB4O00305 520 aaPredicted RBP20.79■□□□□ 0.92
CLN3-219ENST00000565778 MATN3O15232 486 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 ALPIP09923 528 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 CCNCP24863 283 aa20.79■□□□□ 0.92
CLN3-219ENST00000565778 VIPR1P32241 457 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms