RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RASSF2P50749 326 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 CLDN10P78369 228 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 ITGA9Q13797 1035 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 DPY19L3Q6ZPD9 716 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 SLC41A1Q8IVJ1 513 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 C10orf67Q8IYJ2 551 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 AHI1Q8N157 1196 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 SHKBP1Q8TBC3 707 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 RLN3Q8WXF3 142 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS39-205ENST00000562258 CD101Q93033 1021 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 NCLNQ969V3 563 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 E2F7Q96AV8 911 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 RHBGQ9H310 441 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 ANKZF1Q9H8Y5 726 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 A0A1W2PP55 124 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 OR51F1A6NGY5 319 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 CHADO15335 359 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 CD3EAPO15446 510 aaKnown RBP9.28□□□□□ -0.92
VPS39-205ENST00000562258 H2AFYO75367 372 aaKnown RBP9.28□□□□□ -0.92
VPS39-205ENST00000562258 SESN3P58005 492 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 AP1S1P61966 158 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 PTK2BQ14289 1009 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 ZSCAN26Q16670 478 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 NCBP2-AS2Q69YL0 99 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 LAYNQ6UX15 382 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 SPRED2Q7Z698 418 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 CMC1Q7Z7K0 106 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 ARHGAP24Q8N264 748 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 WFIKKN2Q8TEU8 576 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 CAB39LQ9H9S4 337 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 DYRK1BQ9Y463 629 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 ACTL7AQ9Y615 435 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 TMEM189-UBE2V1I3L0A0 370 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 GSTA4O15217 222 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 RIPK2O43353 540 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 ALDH18A1P54886 795 aaKnown RBP9.27□□□□□ -0.92
VPS39-205ENST00000562258 SPANXN3Q5MJ09 141 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 PIK3R6Q5UE93 754 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 TANGO2Q6ICL3 276 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 ALKAL1Q6UXT8 129 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 GDPD4Q6W3E5 623 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 ZCCHC23Q6ZST2 131 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 SETD3Q86TU7 594 aaPredicted RBP9.27□□□□□ -0.92
VPS39-205ENST00000562258 CFAP206Q8IYR0 622 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 OR13C4Q8NGS5 318 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 BCL7CQ8WUZ0 217 aaPredicted RBP9.27□□□□□ -0.92
VPS39-205ENST00000562258 JADE3Q92613 823 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 EBNA1BP2Q99848 306 aaKnown RBP9.27□□□□□ -0.92
VPS39-205ENST00000562258 FEM1AQ9BSK4 669 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 DNAJC28Q9NX36 388 aa9.27□□□□□ -0.92
VPS39-205ENST00000562258 SMG5Q9UPR3 1016 aaKnown RBP9.27□□□□□ -0.92
VPS39-205ENST00000562258 MAST2Q6P0Q8 1798 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 GOLGA8QA0A0J9YX86 632 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 GOLGA8OA6NCC3 632 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 GOLGA8NF8WBI6 632 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 PLK4O00444 970 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 TTPAP49638 278 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 SEC24CP53992 1094 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 PTPRCAPQ14761 206 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 FASTKD3Q14CZ7 662 aaKnown RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 TBCCQ15814 346 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 PFKFB4Q16877 469 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 N4BP2L1Q5TBK1 243 aaPredicted RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 POTEHQ6S545 545 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 PAQR9Q6ZVX9 377 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 GAREM2Q75VX8 874 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 SLC44A2Q8IWA5 706 aaPredicted RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 APCDD1Q8J025 514 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ZCCHC9Q8N567 271 aaKnown RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 PIGKQ92643 395 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 CRISPLD1Q9H336 500 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ELOVL6Q9H5J4 265 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 COPS7BQ9H9Q2 264 aaPredicted RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 IL1RL2Q9HB29 575 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 EML4Q9HC35 981 aaKnown RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 PCYOX1Q9UHG3 505 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 CCL26Q9Y258 94 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 DOCK2Q92608 1830 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 GNG14A0A1W2PPG7 69 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 FAM170BA6NMN3 283 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 LAMTOR5O43504 91 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 TM7SF2O76062 418 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 LCA5LO95447 670 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ASLP04424 464 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 CPA3P15088 417 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 KELP23276 732 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 CD70P32970 193 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 IFI35P80217 286 aaPredicted RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 LRRC74AQ0VAA2 488 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ILF3Q12906 894 aaKnown RBP eCLIP9.27□□□□□ -0.93
VPS39-205ENST00000562258 SPDYE7PQ495Y7 208 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 PPP1R15BQ5SWA1 713 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ENPP7Q6UWV6 458 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 Q6ZVL8 140 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ADGRD2Q7Z7M1 963 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 FBXO39Q8N4B4 442 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 FAM3CQ92520 227 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ZBP1Q9H171 429 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ECT2Q9H8V3 914 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms