RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 POU4F1Q01851 419 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 TLE2Q04725 743 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 RING1Q06587 406 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 ELAVL2Q12926 359 aaKnown RBP10.67□□□□□ -0.7
CUX1-217ENST00000558836 TAF11Q15544 211 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 GIMAP7Q8NHV1 300 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 SIKE1Q9BRV8 207 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 FAM96AQ9H5X1 160 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 PDFQ9HBH1 243 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 BPIFA1Q9NP55 256 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 SSX2IPQ9Y2D8 614 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 DOCK6Q96HP0 2047 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 FNDC1Q4ZHG4 1894 aaPredicted RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 PITPNM1O00562 1244 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 HDAC3O15379 428 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 STC2O76061 302 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 BAG2O95816 211 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 SERPINF2P08697 491 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 SLC11A2P49281 568 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 KLF10Q13118 480 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 TRIM60Q495X7 471 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 FSCBQ5H9T9 825 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 SLC8B1Q6J4K2 584 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 TLDC1Q6P9B6 456 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 HPS6Q86YV9 775 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 ENDOVQ8N8Q3 282 aaKnown RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 IGSF21Q96ID5 467 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 MRPL9Q9BYD2 267 aaKnown RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 FAM50BQ9Y247 325 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 UBA6A0AVT1 1052 aaPredicted RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 H3BNC9 293 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 CD3EAPO15446 510 aaKnown RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 APOA4P06727 396 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 CDH13P55290 713 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 YBEYP58557 167 aaPredicted RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 FAM83EQ2M2I3 478 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 ZNF549Q6P9A3 640 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 CCDC117Q8IWD4 279 aaPredicted RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 RNF148Q8N7C7 305 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 PYDC1Q8WXC3 89 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 PPP1R2P1Q96PQ5 205 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 MRPL57Q9BQC6 102 aaKnown RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 CINPQ9BW66 212 aaPredicted RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 MUC3BQ9H195 1237 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 DONSONQ9NYP3 566 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 FNIP2Q9P278 1114 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 MTRRQ9UBK8 725 aa10.66□□□□□ -0.7
CUX1-217ENST00000558836 AGO1Q9UL18 857 aaKnown RBP10.66□□□□□ -0.7
CUX1-217ENST00000558836 LRRC14BA6NHZ5 514 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 A8MT66 165 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 PPP6CO00743 305 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 GLP2RO95838 553 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 COX4I1P13073 169 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 MAPKAPK2P49137 400 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 ATXN3P54252 364 aaPredicted RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 OXCT1P55809 520 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 ZXDBP98169 803 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 PRKAA1Q13131 559 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 RNF219Q5W0B1 726 aaPredicted RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 EFHBQ8N7U6 833 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 OR4K2Q8NGD2 314 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 OR6K2Q8NGY2 324 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 CALML6Q8TD86 181 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 STN1Q9H668 368 aaKnown RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 CWH43Q9H720 699 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 PLK2Q9NYY3 685 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 UBA2Q9UBT2 640 aaPredicted RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 ATP6AP2A0A1C7CYW4 349 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 GOLGA8CPA6NN73 597 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 PRRG1O14668 218 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 SLC7A4O43246 635 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 MAGEC1O60732 1142 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 ATP6AP2O75787 350 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 RHOCP08134 193 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 LTA4HP09960 611 aaKnown RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 COL6A2P12110 1019 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 ITGAXP20702 1163 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 PMLP29590 882 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 ABL2P42684 1182 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 TUFMP49411 452 aaKnown RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 RAP1GDS1P52306 607 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 TECRLQ5HYJ1 363 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 TXNDC8Q6A555 127 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 CLEC6AQ6EIG7 209 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 SNX32Q86XE0 403 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 ARHGAP24Q8N264 748 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 KDM1BQ8NB78 822 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 LPCAT1Q8NF37 534 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 MDGA1Q8NFP4 955 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 ZNF461Q8TAF7 563 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 DIS3LQ8TF46 1054 aaKnown RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 PTERQ96BW5 349 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 CMTM5Q96DZ9 223 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 RSRC1Q96IZ7 334 aaKnown RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 MMADHCQ9H3L0 296 aaPredicted RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 MFSD1Q9H3U5 465 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 NCKIPSDQ9NZQ3 722 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 TRPM5Q9NZQ8 1165 aa10.65□□□□□ -0.7
CUX1-217ENST00000558836 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.65□□□□□ -0.7
CUX1-217ENST00000558836 TSR3Q9UJK0 312 aaKnown RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms