RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PPP2R3CQ969Q6 453 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 TADA1Q96BN2 335 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 IFT43Q96FT9 208 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 ZNF419Q96HQ0 510 aaPredicted RBP7.31□□□□□ -1.24
VPS13C-206ENST00000558338 FEM1CQ96JP0 617 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 MAELQ96JY0 434 aaKnown RBP7.31□□□□□ -1.24
VPS13C-206ENST00000558338 CEP295NLQ96MC4 621 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 GLT1D1Q96MS3 346 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 ASB2Q96Q27 587 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 TTC1Q99614 292 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 ECSITQ9BQ95 431 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 TSEN34Q9BSV6 310 aaKnown RBP7.31□□□□□ -1.24
VPS13C-206ENST00000558338 NUF2Q9BZD4 464 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 POLR1EQ9GZS1 481 aaKnown RBP7.31□□□□□ -1.24
VPS13C-206ENST00000558338 POMKQ9H5K3 350 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 NOL6Q9H6R4 1146 aaKnown RBP7.31□□□□□ -1.24
VPS13C-206ENST00000558338 ELAC1Q9H777 363 aaKnown RBP7.31□□□□□ -1.24
VPS13C-206ENST00000558338 CYP4F11Q9HBI6 524 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 POPDC3Q9HBV1 291 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 ZBTB26Q9HCK0 441 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 MAN1C1Q9NR34 630 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 TRMT13Q9NUP7 481 aaKnown RBP7.31□□□□□ -1.24
VPS13C-206ENST00000558338 NDFIP2Q9NV92 336 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS13C-206ENST00000558338 TMEM161AQ9NX61 479 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 ZDHHC7Q9NXF8 308 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 PDP2Q9P2J9 529 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 SLC2A6Q9UGQ3 507 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 ZDHHC2Q9UIJ5 367 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 POMPQ9Y244 141 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 TLL2Q9Y6L7 1015 aa7.31□□□□□ -1.24
VPS13C-206ENST00000558338 MROH6A6NGR9 719 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 NEMP1O14524 444 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 SMIM24O75264 130 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 IPO13O94829 963 aaKnown RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 IGLV3-27P01718 113 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PDHA1P08559 390 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 OGNP20774 298 aaKnown RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CCND3P30281 292 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 ACLYP53396 1101 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 NAA20P61599 178 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 IRX1P78414 480 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 NFKB2Q00653 900 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CCNIQ14094 377 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CSHL1Q14406 222 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 SQLEQ14534 574 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 ZNF235Q14590 738 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 POLD3Q15054 466 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 HECTD2Q5U5R9 776 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 NXNQ6DKJ4 435 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 MRNIPQ6NTE8 343 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 TMEM154Q6P9G4 183 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 TRAF7Q6Q0C0 670 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 IZUMO2Q6UXV1 221 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 TRIM67Q6ZTA4 783 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 TFAP2DQ7Z6R9 452 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 SDCCAG8Q86SQ7 713 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 ZNF280BQ86YH2 543 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CILP2Q8IUL8 1156 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 LSMEM2Q8N112 164 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CCNYL1Q8N7R7 359 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 TXNDC5Q8NBS9 432 aaKnown RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PIP4K2CQ8TBX8 421 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 AGR3Q8TD06 166 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PABPC5Q96DU9 382 aaKnown RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 LENG8Q96PV6 779 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 OMDQ99983 421 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 SEZ6LQ9BYH1 1024 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 KLHL4Q9C0H6 718 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 EFCAB1Q9HAE3 211 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 UTP6Q9NYH9 597 aaKnown RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 GTSE1Q9NYZ3 720 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 MARCH2Q9P0N8 246 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 C6orf203Q9P0P8 240 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PPM1HQ9ULR3 514 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 LOC100653049A0A140TA62 436 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 LOC285095A0A1B0GVY8 99 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 A8MT66 165 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 F5H5T6 163 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CASQ2O14958 399 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PEX1O43933 1283 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 KRT34O76011 436 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PDE5AO76074 875 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 F7P08709 466 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 HSPA1AP0DMV8 641 aaKnown RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 HSPA1BP0DMV9 641 aaKnown RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 HOXD10P28358 340 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 EPHA3P29320 983 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CHRNA4P43681 627 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PGFP49763 221 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 ATP4BP51164 291 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 INHBCP55103 352 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 DSC2Q02487 901 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 ACVR1Q04771 509 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 DLG1Q12959 904 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CDC16Q13042 620 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 TRIM32Q13049 653 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 STX5Q13190 355 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 ART3Q13508 389 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 SERINC3Q13530 473 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms