RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 RASA4O43374 803 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 B4GAT1O43505 415 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 CPNE6O95741 557 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 NTRK1P04629 796 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 HOXC4P09017 264 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-223ENST00000556689 EPHB2P29323 1055 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 PTPN9P43378 593 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 HDAC4P56524 1084 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 B4GALNT1Q00973 533 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 SERINC3Q13530 473 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 UBAP2LQ14157 1087 aaKnown RBP12.73□□□□□ -0.37
SHMT2-223ENST00000556689 MAP9Q49MG5 647 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 KCTD16Q68DU8 428 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 SPECC1LQ69YQ0 1117 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 BORAQ6PGQ7 559 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 BRAT1Q6PJG6 821 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 PTRH1Q86Y79 214 aaKnown RBP12.73□□□□□ -0.37
SHMT2-223ENST00000556689 SFTPA2Q8IWL1 248 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 CCDC185Q8N715 623 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 PLA2G15Q8NCC3 412 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 KIAA1524Q8TCG1 905 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 FAM172AQ8WUF8 416 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 JPH3Q8WXH2 748 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-223ENST00000556689 FUBP1Q96AE4 644 aaKnown RBP12.73□□□□□ -0.37
SHMT2-223ENST00000556689 EXOC2Q96KP1 924 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 TAAR9Q96RI9 348 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 FUCA2Q9BTY2 467 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 SLC12A9Q9BXP2 914 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 TMEM168Q9H0V1 697 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 MRPL40Q9NQ50 206 aaKnown RBP12.73□□□□□ -0.37
SHMT2-223ENST00000556689 KIAA1468Q9P260 1216 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 LHX3Q9UBR4 397 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 ATP8A1Q9Y2Q0 1164 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 FHOD1Q9Y613 1164 aa12.73□□□□□ -0.37
SHMT2-223ENST00000556689 RHPN2P1A8MT19 583 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 BUB1BO60566 1050 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-223ENST00000556689 CCL4P13236 92 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 PRKCSHP14314 528 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-223ENST00000556689 UCHL3P15374 230 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 MMP8P22894 467 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 ALDH4A1P30038 563 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 TRIM23P36406 574 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 ATP1A2P50993 1020 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 KIAA1024LP59773 190 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 C16orf72Q14CZ0 275 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 AMZ1Q400G9 498 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 PARP15Q460N3 678 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 SLFN11Q7Z7L1 901 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 ZNF677Q86XU0 584 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 CAMK1DQ8IU85 385 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 LURAP1LQ8IV03 231 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 FAM114A1Q8IWE2 563 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 PYROXD2Q8N2H3 581 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 JOSD2Q8TAC2 188 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 EPS8L1Q8TE68 723 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 NKD1Q969G9 470 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 NTAN1Q96AB6 310 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 TUBGCP2Q9BSJ2 902 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 NAA15Q9BXJ9 866 aaKnown RBP12.72□□□□□ -0.37
SHMT2-223ENST00000556689 STK33Q9BYT3 514 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 CATSPERBQ9H7T0 1116 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 RDH14Q9HBH5 336 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 CYP4F12Q9HCS2 524 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 FGF22Q9HCT0 170 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 ANKMY1Q9P2S6 941 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 UBA2Q9UBT2 640 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-223ENST00000556689 MOSPD1Q9UJG1 213 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 AHCTF1Q8WYP5 2266 aa12.72□□□□□ -0.37
SHMT2-223ENST00000556689 WASH4PA8MWX3 477 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 PDE2AO00408 941 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 PES1O00541 588 aaKnown RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 HGSO14964 777 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 GADD45BO75293 160 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 RECQL5O94762 991 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 CYP1A1P04798 512 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 PRKCGP05129 697 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 KRT3P12035 628 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 MMP12P39900 470 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 STAT1P42224 750 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 OR1D5P58170 312 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 CLPPQ16740 277 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 TSR1Q2NL82 804 aaKnown RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 EFHC2Q5JST6 749 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 MIIPQ5JXC2 388 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 LIPIQ6XZB0 460 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 ZSWIM9Q86XI8 627 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 UMODL1-AS1Q8N2C9 162 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 IL22RA1Q8N6P7 574 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 MLKLQ8NB16 471 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 CCL4L1Q8NHW4 92 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 ZNF564Q8TBZ8 553 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 GPBAR1Q8TDU6 330 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 TUBGCP5Q96RT8 1024 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 CDH19Q9H159 772 aa12.71□□□□□ -0.37
SHMT2-223ENST00000556689 SPATS2LQ9NUQ6 558 aaKnown RBP12.71□□□□□ -0.37
SHMT2-223ENST00000556689 F8VZ95 297 aa12.7□□□□□ -0.38
SHMT2-223ENST00000556689 CREB3O43889 395 aa12.7□□□□□ -0.38
SHMT2-223ENST00000556689 FGF1P05230 155 aa12.7□□□□□ -0.38
SHMT2-223ENST00000556689 FGF3P11487 239 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-223ENST00000556689 CCNB1P14635 433 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms