RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 UFM1P61960 85 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 RPP30P78346 268 aaKnown RBP3.36□□□□□ -1.87
VRK1-202ENST00000553683 PTP4A2Q12974 167 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 OASLQ15646 514 aaKnown RBP3.36□□□□□ -1.87
VRK1-202ENST00000553683 CES5AQ6NT32 575 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 GPAT4Q86UL3 456 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 NAGSQ8N159 534 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 PGBD5Q8N414 524 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 HTRA1Q92743 480 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 SCMH1Q96GD3 660 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 APOPT1Q96IL0 206 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 SIN3AQ96ST3 1273 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 VPS33BQ9H267 617 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 PLEKHA4Q9H4M7 779 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 EBF2Q9HAK2 575 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 C17orf75Q9HAS0 396 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 C20orf141Q9NUB4 165 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 MCM9Q9NXL9 1143 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 HSPB7Q9UBY9 170 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 FAM96BQ9Y3D0 163 aa3.36□□□□□ -1.87
VRK1-202ENST00000553683 TNPO2O14787 897 aaKnown RBP3.35□□□□□ -1.87
VRK1-202ENST00000553683 RRM1P23921 792 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 COMPP49747 757 aaPredicted RBP3.35□□□□□ -1.87
VRK1-202ENST00000553683 EEF1A2Q05639 463 aaKnown RBP3.35□□□□□ -1.87
VRK1-202ENST00000553683 TROAPQ12815 778 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 GRSF1Q12849 480 aaKnown RBP eCLIP3.35□□□□□ -1.87
VRK1-202ENST00000553683 TNFAIP1Q13829 316 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 DHX34Q14147 1143 aaKnown RBP3.35□□□□□ -1.87
VRK1-202ENST00000553683 RNPS1Q15287 305 aaKnown RBP3.35□□□□□ -1.87
VRK1-202ENST00000553683 SF3B4Q15427 424 aaKnown RBP eCLIP3.35□□□□□ -1.872e-13■■■□□ 14.8
VRK1-202ENST00000553683 ZNF672Q499Z4 452 aaPredicted RBP3.35□□□□□ -1.87
VRK1-202ENST00000553683 ATP13A5Q4VNC0 1218 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 SETMARQ53H47 684 aaPredicted RBP3.35□□□□□ -1.87
VRK1-202ENST00000553683 SGO1Q5FBB7 561 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 RHBDF2Q6PJF5 856 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.35□□□□□ -1.87
VRK1-202ENST00000553683 KRBA2Q6ZNG9 492 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 CUZD1Q86UP6 607 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 NFKBIDQ8NI38 313 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 HVCN1Q96D96 273 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 ZBTB10Q96DT7 871 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 ZNF570Q96NI8 536 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 UBTD1Q9HAC8 227 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 MAGEE1Q9HCI5 957 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 MKKSQ9NPJ1 570 aaPredicted RBP3.35□□□□□ -1.87
VRK1-202ENST00000553683 RRN3Q9NYV6 651 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 ZNF224Q9NZL3 707 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 A4GNTQ9UNA3 340 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 STON1Q9Y6Q2 735 aa3.35□□□□□ -1.87
VRK1-202ENST00000553683 RRN3P2A6NIE6 340 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 AKR1B15C9JRZ8 316 aaPredicted RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 USP17L23D6RBM5 183 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 ZIC3O60481 467 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 TACC1O75410 805 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 PMS2P2O95744 297 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 POLBP06746 335 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 F7P08709 466 aaPredicted RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 HNRNPA1P09651 372 aaKnown RBP eCLIP3.34□□□□□ -1.87
VRK1-202ENST00000553683 MAOAP21397 527 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 MCM3P25205 808 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 ABCD1P33897 745 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 CPOXP36551 454 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 MAPK9P45984 424 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 SEC61BP60468 96 aaKnown RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 ZNF155Q12901 538 aaPredicted RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 EFNB3Q15768 340 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 METTL2BQ6P1Q9 378 aaKnown RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 SLC22A25Q6T423 547 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 MTSS1LQ765P7 747 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 WDR63Q8IWG1 891 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 ZCCHC9Q8N567 271 aaKnown RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 NEK9Q8TD19 979 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 METTL2AQ96IZ6 378 aaKnown RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 IL17FQ96PD4 163 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 FAM110AQ9BQ89 295 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 RANBP17Q9H2T7 1088 aaKnown RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 PRKRIP1Q9H875 184 aaPredicted RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 VEZTQ9HBM0 779 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 BPIFA1Q9NP55 256 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 CISD1Q9NZ45 108 aaKnown RBP3.34□□□□□ -1.87
VRK1-202ENST00000553683 SIX4Q9UIU6 781 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 ICAM5Q9UMF0 924 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 CDC14AQ9UNH5 594 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 TMEM98Q9Y2Y6 226 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 CYP46A1Q9Y6A2 500 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 SCINQ9Y6U3 715 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 TAF1P21675 1872 aa3.34□□□□□ -1.87
VRK1-202ENST00000553683 IGHV4OR15-8A0A075B7B6 117 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 SAA2-SAA4A0A096LPE2 208 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 TEX13CA0A0J9YWL9 993 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 A0A1B0GVC2 190 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 hDV102S1A0JD36 115 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 TMEM202A6NGA9 273 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 NPIPB11E5RHQ5 1161 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 PLRG1O43660 514 aaKnown RBP3.33□□□□□ -1.88
VRK1-202ENST00000553683 NDUFS7O75251 213 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 F9P00740 461 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 LINC00271P0C7V0 271 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 ANOS1P23352 680 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 CNTFP26441 200 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms