RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 DFFAO00273 331 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 EPHX1P07099 455 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 MGAT1P26572 445 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 CD68P34810 354 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-208ENST00000537004 P2RY2P41231 377 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 SESN2P58004 480 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-208ENST00000537004 CRADDP78560 199 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 IL9RQ01113 521 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 NRG1Q02297 640 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-208ENST00000537004 ZNF33AQ06730 810 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 CDH18Q13634 790 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 ENPP2Q13822 863 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 SPARCL1Q14515 664 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 MAP7D1Q3KQU3 841 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 TEX44Q53QW1 395 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 STEAP4Q687X5 459 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 MBLAC2Q68D91 279 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 ITPRIPL1Q6GPH6 555 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 TRMT10BQ6PF06 316 aaKnown RBP12.05□□□□□ -0.48
CLIP1-208ENST00000537004 SERPINA13PQ6UXR4 307 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 KIAA0907Q7Z7F0 614 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-208ENST00000537004 TMEFF1Q8IYR6 380 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 CACNA2D3Q8IZS8 1091 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 DEFB119Q8N690 84 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 FIBINQ8TAL6 211 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 ZC3H10Q96K80 434 aaKnown RBP12.05□□□□□ -0.48
CLIP1-208ENST00000537004 MAGEB18Q96M61 343 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 PAIP2Q9BPZ3 127 aaKnown RBP12.05□□□□□ -0.48
CLIP1-208ENST00000537004 DDX50Q9BQ39 737 aaKnown RBP12.05□□□□□ -0.48
CLIP1-208ENST00000537004 SMYD2Q9NRG4 433 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 RXFP3Q9NSD7 469 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 SEMA4GQ9NTN9 838 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 VANGL2Q9ULK5 521 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 RRP15Q9Y3B9 282 aaKnown RBP12.05□□□□□ -0.48
CLIP1-208ENST00000537004 FAM169AQ9Y6X4 670 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 SPAG17Q6Q759 2223 aa12.05□□□□□ -0.48
CLIP1-208ENST00000537004 E9PAM4 449 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 F5H5T6 163 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 H0Y626 953 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 GDF9O60383 454 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 FAM155BO75949 473 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 ASMTLO95671 621 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 AP2A1O95782 977 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 MT-ND3P03897 115 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 CTSOP43234 321 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 EIF4HQ15056 248 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 SF3A2Q15428 464 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 ARMCX6Q7L4S7 300 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 ARHGAP12Q8IWW6 846 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 C10orf67Q8IYJ2 551 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 APCDD1Q8J025 514 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 AHI1Q8N157 1196 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 ATPAF2Q8N5M1 289 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 LZTR1Q8N653 840 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 OR52K2Q8NGK3 314 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 UCMAQ8WVF2 138 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 C1orf74Q96LT6 269 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 TEKT5Q96M29 485 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 NSRP1Q9H0G5 558 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 ZNF180Q9UJW8 692 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 PLA2G4CQ9UP65 541 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 ATXN2Q99700 1313 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 TYW5A2RUC4 315 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 FAM159BA6NKW6 160 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 ERI2A8K979 691 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 GOLGA8RI6L899 631 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 SUN1O94901 812 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 LUC7L3O95232 432 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 JCHAINP01591 159 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 NFKB1P19838 968 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 CCNCP24863 283 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 CSKP41240 450 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 PTGER3P43115 390 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 CREB5Q02930 508 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 SLC1A5Q15758 541 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 FNDC3BQ53EP0 1204 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 TTC39BQ5VTQ0 682 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 PMS2CLQ68D20 193 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 KCTD11Q693B1 232 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 TCEAL6Q6IPX3 200 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 KIAA1324Q6UXG2 1013 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 ARHGAP36Q6ZRI8 547 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 PIGWQ7Z7B1 504 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 CCNJLQ8IV13 435 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 RTL3Q8N8U3 475 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 BANPQ8N9N5 519 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 TCEAL3Q969E4 200 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 ALKBH8Q96BT7 664 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 RMDN1Q96DB5 314 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 CABS1Q96KC9 395 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 RPRD1AQ96P16 312 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 TSGA13Q96PP4 275 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 KLF6Q99612 283 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 FGFR1OP2Q9NVK5 253 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 GEMIN8Q9NWZ8 242 aaKnown RBP12.04□□□□□ -0.48
CLIP1-208ENST00000537004 SYBUQ9NX95 663 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 MPP6Q9NZW5 540 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 SAMD15Q9P1V8 674 aa12.04□□□□□ -0.48
CLIP1-208ENST00000537004 CYP8B1Q9UNU6 501 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms