RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 NT5MQ9NPB1 228 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 MBNL1Q9NR56 388 aaKnown RBP20.72■□□□□ 0.91
VPS28-206ENST00000526734 UCKL1Q9NWZ5 548 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 PCDHGC4Q9Y5F7 938 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 TRIM38O00635 465 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 TPP1O14773 563 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 AQP9O43315 295 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 KRT1P04264 644 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 HNF1BP35680 557 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 DUSP3P51452 185 aaPredicted RBP20.71■□□□□ 0.91
VPS28-206ENST00000526734 DAB2P98082 770 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 EIF2B5Q13144 721 aaKnown RBP20.71■□□□□ 0.91
VPS28-206ENST00000526734 ARMC12Q5T9G4 340 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 USP45Q70EL2 814 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 PHACTR4Q8IZ21 702 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 PDCD6IPQ8WUM4 868 aaKnown RBP20.71■□□□□ 0.91
VPS28-206ENST00000526734 CALR3Q96L12 384 aaKnown RBP20.71■□□□□ 0.91
VPS28-206ENST00000526734 MAK16Q9BXY0 300 aaKnown RBP20.71■□□□□ 0.91
VPS28-206ENST00000526734 SLC13A1Q9BZW2 595 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 RBSNQ9H1K0 784 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 B4GALT6Q9UBX8 382 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 APOBEC3BQ9UH17 382 aaKnown RBP20.71■□□□□ 0.91
VPS28-206ENST00000526734 DNPEPQ9ULA0 475 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 COQ6Q9Y2Z9 468 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 EPG5Q9HCE0 2579 aa20.71■□□□□ 0.91
VPS28-206ENST00000526734 A0A0A6YYK5 440 aaPredicted RBP20.7■□□□□ 0.9
VPS28-206ENST00000526734 PSMD11O00231 422 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 FFAR2O15552 330 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 SPOPO43791 374 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 RECQL5O94762 991 aaPredicted RBP20.7■□□□□ 0.9
VPS28-206ENST00000526734 PGLSO95336 258 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 IPO7O95373 1038 aaKnown RBP20.7■□□□□ 0.9
VPS28-206ENST00000526734 KELP23276 732 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 VIPR1P32241 457 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 MAXP61244 160 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 E2F1Q01094 437 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 PPARDQ03181 441 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 GBE1Q04446 702 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 TRAF2Q12933 501 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 DNAJC3Q13217 504 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 NFATC4Q14934 902 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 CCDC157Q569K6 752 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 ZNF542PQ5EBM4 170 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 SLC9A4Q6AI14 798 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 ZCCHC8Q6NZY4 707 aaKnown RBP20.7■□□□□ 0.9
VPS28-206ENST00000526734 DHRS13Q6UX07 377 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 CCDC13Q8IYE1 715 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 MCCC1Q96RQ3 725 aaPredicted RBP20.7■□□□□ 0.9
VPS28-206ENST00000526734 SEMA3CQ99985 751 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 BRD8Q9H0E9 1235 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 RBM22Q9NW64 420 aaKnown RBP eCLIP20.7■□□□□ 0.9
VPS28-206ENST00000526734 DTLQ9NZJ0 730 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 PPIL1Q9Y3C6 166 aa20.7■□□□□ 0.9
VPS28-206ENST00000526734 K7ESM1 405 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 APOL1O14791 398 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 PSTPIP1O43586 416 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 PRKCGP05129 697 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 HOXC4P09017 264 aaPredicted RBP20.69■□□□□ 0.9
VPS28-206ENST00000526734 GIMD1P0DJR0 217 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 CKMT1AP12532 417 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 CCNB1P14635 433 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 FECHP22830 423 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 NOP2P46087 812 aaKnown RBP20.69■□□□□ 0.9
VPS28-206ENST00000526734 KIAA1024LP59773 190 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 ITKQ08881 620 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 TPRG1LQ5T0D9 272 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 TMTC1Q8IUR5 882 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 CACTIN-AS1Q8N1I8 211 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 SDR16C5Q8N3Y7 309 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 FSTL5Q8N475 847 aaPredicted RBP20.69■□□□□ 0.9
VPS28-206ENST00000526734 CCNYQ8ND76 341 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 SCRN2Q96FV2 425 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 NSMCE3Q96MG7 304 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 APOOQ9BUR5 198 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 SALL4Q9UJQ4 1053 aa20.69■□□□□ 0.9
VPS28-206ENST00000526734 C3orf70A6NLC5 250 aaPredicted RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 CACNB4O00305 520 aaPredicted RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 PPP1R12AO14974 1030 aaPredicted RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 HEXIM1O94992 359 aaKnown RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 RASGRP1O95267 797 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 GP1BAP07359 652 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 COMTP21964 271 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 RPL26P61254 145 aaKnown RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 PPIDQ08752 370 aaKnown RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 INPP5AQ14642 412 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 PDK1Q15118 436 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 FAXCQ5TGI0 409 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 ESRP1Q6NXG1 681 aaKnown RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 BZW1Q7L1Q6 419 aaKnown RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 PLD5Q8N7P1 536 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 TPCN2Q8NHX9 752 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 LMX1AQ8TE12 382 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 ZCCHC14Q8WYQ9 949 aaKnown RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 GLMNQ92990 594 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 COQ10AQ96MF6 247 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 IL12RB2Q99665 862 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 RPL26L1Q9UNX3 145 aaKnown RBP20.68■□□□□ 0.9
VPS28-206ENST00000526734 PCDHA13Q9Y5I0 950 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 RAI2Q9Y5P3 530 aa20.68■□□□□ 0.9
VPS28-206ENST00000526734 TTC24A2A3L6 582 aaPredicted RBP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms