RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 NSUN2Q08J23 767 aaKnown RBP eCLIP13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 SLC10A7Q0GE19 358 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 CCDC173Q0VFZ6 552 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 TMCO4Q5TGY1 634 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 LIPIQ6XZB0 460 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 DPPA4Q7L190 304 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 HID1Q8IV36 788 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 SPACA3Q8IXA5 215 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 FSTL5Q8N475 847 aaPredicted RBP13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 LZTR1Q8N653 840 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 ARL10Q8N8L6 244 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 KYQ8NBH2 561 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 TPCN2Q8NHX9 752 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 GLMNQ92990 594 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 NAT6Q93015 286 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 ATXN7L3BQ96GX2 97 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 ZNF578Q96N58 590 aaPredicted RBP13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 APOOQ9BUR5 198 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 ZWILCHQ9H900 591 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 POLR1BQ9H9Y6 1135 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 MRPL47Q9HD33 250 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 ETNK2Q9NVF9 386 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 MYO1AQ9UBC5 1043 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 KLQ9UEF7 1012 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 ENTPD2Q9Y5L3 495 aa13.08□□□□□ -0.32
HMGCS1-205ENST00000508319 CFAP69A5D8W1 941 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 H3BRJ5 948 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 RECQL5O94762 991 aaPredicted RBP13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 RASGRP1O95267 797 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 SERPINC1P01008 464 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 ALPIP09923 528 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 ELFN1P0C7U0 828 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 SCNN1BP51168 640 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 SRP54P61011 504 aaKnown RBP13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 BCL2L1Q07817 233 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 LBRQ14739 615 aaKnown RBP13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 ACAP1Q15027 740 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 ELOCQ15369 112 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 TCEA2Q15560 299 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 C3orf38Q5JPI3 329 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 TXNRD3NBQ6F5E7 133 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 LVRNQ6Q4G3 990 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 IGF2-ASQ6U949 168 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 ENPP7Q6UWV6 458 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 RBM44Q6ZP01 1051 aaKnown RBP13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 POLNQ7Z5Q5 900 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 LSMEM2Q8N112 164 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 ZNF248Q8NDW4 579 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 SPOCK2Q92563 424 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 GRAMD1AQ96CP6 724 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 WDR92Q96MX6 357 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 ZNF599Q96NL3 588 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 FCRL3Q96P31 734 aaPredicted RBP13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 CSPG4P5Q96PW8 444 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 UBL7Q96S82 380 aaPredicted RBP13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 LGMNQ99538 433 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 CCDC3Q9BQI4 270 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 SIRPGQ9P1W8 387 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 SEPT3Q9UH03 358 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 PADI4Q9UM07 663 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 SATB2Q9UPW6 733 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 DGKBQ9Y6T7 804 aa13.07□□□□□ -0.32
HMGCS1-205ENST00000508319 AHCTF1Q8WYP5 2266 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 ARHGEF17Q96PE2 2063 aaPredicted RBP13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 TTC24A2A3L6 582 aaPredicted RBP13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 PMS2P1A4D2B8 440 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 HTRA2O43464 458 aaPredicted RBP13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 MAFKO60675 156 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 RARAP10276 462 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 CR2P20023 1033 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 AMPD1P23109 780 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 ARL4AP40617 200 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 RENBPP51606 427 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 KIAA1024LP59773 190 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 ERVPABLB-1P60509 514 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 SLC25A11Q02978 314 aaKnown RBP13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 ZNF235Q14590 738 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 TDRD12Q587J7 1177 aaKnown RBP13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 ESRP1Q6NXG1 681 aaKnown RBP13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 TMCO3Q6UWJ1 677 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 RD3Q7Z3Z2 195 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 PELI3Q8N2H9 469 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 SDR16C5Q8N3Y7 309 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 PGBD5Q8N414 524 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 NIPA2Q8N8Q9 360 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 TEKT4Q8WW24 435 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 HSPH1Q92598 858 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 FUBP1Q96AE4 644 aaKnown RBP13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 RBM15Q96T37 977 aaKnown RBP eCLIP13.06□□□□□ -0.324e-8■□□□□ 8.7
HMGCS1-205ENST00000508319 THAP2Q9H0W7 228 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 CBX8Q9HC52 389 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 FGF22Q9HCT0 170 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 RABGEF1Q9UJ41 708 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 DOLKQ9UPQ8 538 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 SSUH2Q9Y2M2 353 aa13.06□□□□□ -0.32
HMGCS1-205ENST00000508319 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.05□□□□□ -0.32
HMGCS1-205ENST00000508319 A0A1W2PQJ5 194 aa13.05□□□□□ -0.32
HMGCS1-205ENST00000508319 SYCE3A1L190 88 aa13.05□□□□□ -0.32
HMGCS1-205ENST00000508319 TMEM202A6NGA9 273 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms