RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 WDR45BQ5MNZ6 344 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 MAP3K21Q5TCX8 1036 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 SERTAD4-AS1Q5TG53 156 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 STPG1Q5TH74 334 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 ATG16L1Q676U5 607 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 WDR73Q6P4I2 378 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 UNQ6126/PRO20091Q6UXV3 157 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 BBS12Q6ZW61 710 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 NEK10Q6ZWH5 1172 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 USP38Q8NB14 1042 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 SPATA5Q8NB90 893 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 TANKQ92844 425 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 CD101Q93033 1021 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 HAUS8Q9BT25 410 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 KCNN2Q9H2S1 579 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 ESRP2Q9H6T0 727 aaKnown RBP3.26□□□□□ -1.89
VPS50-216ENST00000484954 EVA1AQ9H8M9 152 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 EBF2Q9HAK2 575 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 BABAM1Q9NWV8 329 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 ZNF224Q9NZL3 707 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 C1RLQ9NZP8 487 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 SIX4Q9UIU6 781 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 ERRFI1Q9UJM3 462 aaPredicted RBP3.26□□□□□ -1.89
VPS50-216ENST00000484954 ADAM18Q9Y3Q7 739 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 ZNF711Q9Y462 761 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 COMMD10Q9Y6G5 202 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 GREB1LQ9C091 1923 aaPredicted RBP3.25□□□□□ -1.89
VPS50-216ENST00000484954 TAF1P21675 1872 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 A0A0G2JPF8 293 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 HNRNPCL3B7ZW38 293 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 PLRG1O43660 514 aaKnown RBP3.25□□□□□ -1.89
VPS50-216ENST00000484954 HNRNPCL1O60812 293 aaKnown RBP3.25□□□□□ -1.89
VPS50-216ENST00000484954 SOCS5O75159 536 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 GAGE7O76087 117 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 NDUFB4O95168 129 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 CYC1P08574 325 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 GAGE12FP0CL80 117 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 GAGE12GP0CL81 117 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 GAGE12IP0CL82 117 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 HNRNPCL4P0DMR1 293 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 G6PDP11413 515 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 AMD1P17707 334 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 HALP42357 657 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 FUT6P51993 359 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 YWHAZP63104 245 aaKnown RBP3.25□□□□□ -1.89
VPS50-216ENST00000484954 SLC20A2Q08357 652 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 GAGE1Q13065 139 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 GAGE4Q13068 117 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 EFR3AQ14156 821 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 RBBP5Q15291 538 aaKnown RBP3.25□□□□□ -1.89
VPS50-216ENST00000484954 EIF2S3LQ2VIR3 472 aaKnown RBP3.25□□□□□ -1.89
VPS50-216ENST00000484954 SGO1Q5FBB7 561 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 OTUD3Q5T2D3 398 aaPredicted RBP3.25□□□□□ -1.89
VPS50-216ENST00000484954 FBXO46Q6PJ61 603 aaPredicted RBP3.25□□□□□ -1.89
VPS50-216ENST00000484954 MTSS1LQ765P7 747 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 DHX40Q8IX18 779 aaKnown RBP3.25□□□□□ -1.89
VPS50-216ENST00000484954 ODF3L1Q8IXM7 274 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 SLC35F3Q8IY50 421 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 HERVK_113Q902F9 699 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 FIG4Q92562 907 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 CSTL1Q9H114 145 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 IL1RAPL1Q9NZN1 696 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 KIAA1456Q9P272 454 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 HSPB7Q9UBY9 170 aa3.25□□□□□ -1.89
VPS50-216ENST00000484954 BCAT2O15382 392 aaPredicted RBP3.24□□□□□ -1.89
VPS50-216ENST00000484954 TSPAN3O60637 253 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 TACC1O75410 805 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 HLA-DOBP13765 273 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 ETFAP13804 333 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 CLCN3P51790 818 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 EFNB1P98172 346 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 TNFAIP1Q13829 316 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 KRT71Q3SY84 523 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 ATP13A5Q4VNC0 1218 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 ZNF449Q6P9G9 518 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 SLC22A25Q6T423 547 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 DSTYKQ6XUX3 929 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 FOXL2NBQ6ZUU3 175 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 MARK2Q7KZI7 788 aaKnown RBP3.24□□□□□ -1.89
VPS50-216ENST00000484954 EXOC3L1Q86VI1 746 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 TDRPQ86YL5 185 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 IL17RCQ8NAC3 791 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 TMEM19Q96HH6 336 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 PGLYRP2Q96PD5 576 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 ISCA1Q9BUE6 129 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 GLIS2Q9BZE0 524 aaPredicted RBP3.24□□□□□ -1.89
VPS50-216ENST00000484954 TKTL2Q9H0I9 626 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 PPCSQ9HAB8 311 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 MKKSQ9NPJ1 570 aaPredicted RBP3.24□□□□□ -1.89
VPS50-216ENST00000484954 RIC8AQ9NPQ8 531 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 CNGB3Q9NQW8 809 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 SMYD2Q9NRG4 433 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 CARD8Q9Y2G2 431 aa3.24□□□□□ -1.89
VPS50-216ENST00000484954 TEX22C9J3V5 150 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 EIF3FO00303 357 aaPredicted RBP3.23□□□□□ -1.89
VPS50-216ENST00000484954 NTN3O00634 580 aaPredicted RBP3.23□□□□□ -1.89
VPS50-216ENST00000484954 HEXAP06865 529 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 GALTP07902 379 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 PCNAP12004 261 aa3.23□□□□□ -1.89
VPS50-216ENST00000484954 AGAP20933 346 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms