RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 DAAM1Q9Y4D1 1078 aa17.29■□□□□ 0.36
VIM-204ENST00000478746 PCDHGA3Q9Y5H0 932 aa17.29■□□□□ 0.36
VIM-204ENST00000478746 NOTCH2Q04721 2471 aa17.29■□□□□ 0.36
VIM-204ENST00000478746 TMEM202A6NGA9 273 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 CACNB4O00305 520 aaPredicted RBP17.28■□□□□ 0.36
VIM-204ENST00000478746 INSIG1O15503 277 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 ZW10O43264 779 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 PNMA6AP0CW24 399 aaPredicted RBP17.28■□□□□ 0.36
VIM-204ENST00000478746 CDH5P33151 784 aaPredicted RBP17.28■□□□□ 0.36
VIM-204ENST00000478746 UGT1A3P35503 534 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 ARSDP51689 593 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 INO80DQ53TQ3 878 aaPredicted RBP17.28■□□□□ 0.36
VIM-204ENST00000478746 C2CD6Q53TS8 623 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 ERAP2Q6P179 960 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 PLA2G15Q8NCC3 412 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 KIAA1524Q8TCG1 905 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 SUV39H2Q9H5I1 410 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 FGF22Q9HCT0 170 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 MOSPD1Q9UJG1 213 aa17.28■□□□□ 0.36
VIM-204ENST00000478746 AJAP1Q9UKB5 411 aaPredicted RBP17.28■□□□□ 0.36
VIM-204ENST00000478746 USP9XQ93008 2570 aaPredicted RBP17.28■□□□□ 0.36
VIM-204ENST00000478746 IGHV5-10-1A0A0J9YXX1 117 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 RHPN2P1A8MT19 583 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 ZNF891A8MT65 544 aaPredicted RBP17.27■□□□□ 0.36
VIM-204ENST00000478746 FAM72CH0Y354 149 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 BIN1O00499 593 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 TNFRSF10CO14798 259 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 LRIG2O94898 1065 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 PIGNO95427 931 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 KELP23276 732 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 KIAA1024LP59773 190 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 CLPPQ16740 277 aaPredicted RBP17.27■□□□□ 0.36
VIM-204ENST00000478746 RAB6CQ53S08 254 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 FAM72AQ5TYM5 149 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 FAM72DQ6L9T8 149 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 ARCQ7LC44 396 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 FAM72BQ86X60 149 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 ELOA2Q8IYF1 753 aaPredicted RBP17.27■□□□□ 0.36
VIM-204ENST00000478746 FAM71AQ8IYT1 594 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 CACNA2D3Q8IZS8 1091 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 CCL4L1Q8NHW4 92 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 C9orf43Q8TAL5 461 aaPredicted RBP17.27■□□□□ 0.36
VIM-204ENST00000478746 FUBP1Q96AE4 644 aaKnown RBP17.27■□□□□ 0.36
VIM-204ENST00000478746 TBC1D31Q96DN5 1066 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 NUDT22Q9BRQ3 303 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 MAGEB5Q9BZ81 275 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 RAB6CQ9H0N0 254 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 LRRC4CQ9HCJ2 640 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 CYP4F12Q9HCS2 524 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 B3GALT1Q9Y5Z6 326 aa17.27■□□□□ 0.36
VIM-204ENST00000478746 GTPBP10A4D1E9 387 aaKnown RBP17.26■□□□□ 0.35
VIM-204ENST00000478746 BLACEA4D250 179 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 CAPN5O15484 640 aaPredicted RBP17.26■□□□□ 0.35
VIM-204ENST00000478746 PLEKP08567 350 aaPredicted RBP17.26■□□□□ 0.35
VIM-204ENST00000478746 GRM3Q14832 879 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 CDO1Q16878 200 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 CFAP58Q5T655 872 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 EMC1Q8N766 993 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 MSANTD4Q8NCY6 345 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 CCDC112Q8NEF3 446 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 ART4Q93070 314 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 PMEPA1Q969W9 287 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 CCDC74BQ96LY2 380 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 SIX2Q9NPC8 291 aa17.26■□□□□ 0.35
VIM-204ENST00000478746 SPATS2LQ9NUQ6 558 aaKnown RBP17.26■□□□□ 0.35
VIM-204ENST00000478746 ANKRD36A6QL64 1941 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 NKX2-8O15522 239 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 HOXC4P09017 264 aaPredicted RBP17.25■□□□□ 0.35
VIM-204ENST00000478746 CD1CP29017 333 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 CSTF2P33240 577 aaKnown RBP eCLIP17.25■□□□□ 0.35
VIM-204ENST00000478746 LIMK2P53671 638 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 MAZP56270 477 aaKnown RBP17.25■□□□□ 0.35
VIM-204ENST00000478746 TRA2AQ13595 282 aaKnown RBP eCLIP17.25■□□□□ 0.35
VIM-204ENST00000478746 C15orf59Q2T9L4 293 aaPredicted RBP17.25■□□□□ 0.35
VIM-204ENST00000478746 TAF3Q5VWG9 929 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 AGBL5Q8NDL9 886 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 ZDHHC1Q8WTX9 485 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 EXOC2Q96KP1 924 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 ASPSCR1Q9BZE9 553 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 KLC2Q9H0B6 622 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 SLC39A1Q9NY26 324 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 PLAAQ9Y263 795 aa17.25■□□□□ 0.35
VIM-204ENST00000478746 TSPAN11A1L157 253 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 CFAP69A5D8W1 941 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 RAD1O60671 282 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 RECQL5O94762 991 aaPredicted RBP17.24■□□□□ 0.35
VIM-204ENST00000478746 PRKCGP05129 697 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 FGF1P05230 155 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 CYP11B1P15538 503 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 TRIM23P36406 574 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 MMP12P39900 470 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 STAT1P42224 750 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 GPR3P46089 330 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 BIRC2Q13490 618 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 CYTH1Q15438 398 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 TSR1Q2NL82 804 aaKnown RBP17.24■□□□□ 0.35
VIM-204ENST00000478746 BRAT1Q6PJG6 821 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 ZNF438Q7Z4V0 828 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 C17orf82Q86X59 251 aaPredicted RBP17.24■□□□□ 0.35
VIM-204ENST00000478746 DNAAF5Q86Y56 855 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms